DY305575

Overview
NameDY305575
Unique NameDY305575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_YERPE (Spermidine synthase OS=Yersinia pestis GN=speE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 82/226 (36.28%), Postives = 128/226 (56.64%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQE-AFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            W+E  +  +    F++  VL +  +E QD+ + +    G+V+ +DG +Q+ E DEFIYHE + H PLL H   K V I+GGG+G+  RE  +HK++E + M +ID  VV+FCR++L  +   A+   +  LV++D    + +  EKFDVI  D  DP+  GP   L+T  FYE   +  LN+ GIFV Q G    F  ++   + +N +   F  V  Y A +P++
Sbjct:    7 WYE-TLHANFGQYFSVENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTEKFDVIISDCTDPI--GPGESLFTSVFYEGCAR-SLNEGGIFVAQNGV--CFLQQDEAVNSHNKLSHYFSDVSFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_YERPA (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=speE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 82/226 (36.28%), Postives = 128/226 (56.64%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQE-AFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            W+E  +  +    F++  VL +  +E QD+ + +    G+V+ +DG +Q+ E DEFIYHE + H PLL H   K V I+GGG+G+  RE  +HK++E + M +ID  VV+FCR++L  +   A+   +  LV++D    + +  EKFDVI  D  DP+  GP   L+T  FYE   +  LN+ GIFV Q G    F  ++   + +N +   F  V  Y A +P++
Sbjct:    7 WYE-TLHANFGQYFSVENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDPRFKLVIDDGVNFVNQTTEKFDVIISDCTDPI--GPGESLFTSVFYEGCAR-SLNEGGIFVAQNGV--CFLQQDEAVNSHNKLSHYFSDVSFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SHIFL (Spermidine synthase OS=Shigella flexneri GN=speE PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFQLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SHIF8 (Spermidine synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=speE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFQLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECOSM (Spermidine synthase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=speE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECOSE (Spermidine synthase OS=Escherichia coli (strain SE11) GN=speE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECOLU (Spermidine synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECOLI (Spermidine synthase OS=Escherichia coli (strain K12) GN=speE PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECOLC (Spermidine synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=speE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECOL6 (Spermidine synthase OS=Escherichia coli O6 GN=speE PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
The following BLAST results are available for this feature:
BLAST of DY305575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
SPEE_YERPE6.264e-3636.28Spermidine synthase OS=Yersinia pestis GN=speE PE=... [more]
SPEE_YERPA6.264e-3636.28Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]
SPEE_SHIFL6.264e-3636.89Spermidine synthase OS=Shigella flexneri GN=speE P... [more]
SPEE_SHIF86.264e-3636.89Spermidine synthase OS=Shigella flexneri serotype ... [more]
SPEE_ECOSM6.264e-3636.89Spermidine synthase OS=Escherichia coli (strain SM... [more]
SPEE_ECOSE6.264e-3636.89Spermidine synthase OS=Escherichia coli (strain SE... [more]
SPEE_ECOLU6.264e-3636.89Spermidine synthase OS=Escherichia coli O17:K52:H1... [more]
SPEE_ECOLI6.264e-3636.89Spermidine synthase OS=Escherichia coli (strain K1... [more]
SPEE_ECOLC6.264e-3636.89Spermidine synthase OS=Escherichia coli (strain AT... [more]
SPEE_ECOL66.264e-3636.89Spermidine synthase OS=Escherichia coli O6 GN=speE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305575 ID=DY305575; Name=DY305575; organism=Citrus sinensis; type=EST; length=1251bp
GAGTTATCCCATTTCTGTGCTTCTAATTTGATCATGGGTACCGAGGCTGT
TGAGATCTTATTTGAAAATGGTTTCTCGAAGGTCTGCAATGATACGGATC
CAAATATCAATGGCAACCTCCAAGATTGCTGCTGGTTTGAGGAAGTCATT
GATGATGATCTCAAATGGTCCTTTGCTTTGAACAGAGTGCTGCATAAAGG
GACCAGCGAATTCCAGGATATTGCTCTTTTGGACACAAAGCGTTTTGGAA
AGGTGCTGGTGATTGATGGGAAGATGCAGAGTGCTGAAGTGGATGAATTT
ATTTATCATGAATGCTTGATCCACCCTCCCCTCTTGTGTCACCAGAATCC
CAAAACTGTATTCATAATGGGAGGTGGTGAAGGTTCTGCTGCGAGGGAAG
CTCTCAAGCACAAGTCTCTTGAGAGCGTGGTCATGTGTGACATCGACCAG
GAAGTAGTCGATTTCTGCCGCAGATTTCTGACAGTGAATCAAGAGGCATT
CTGCAGCAAGAAGCTTAATCTTGTTGTTAATGATGCCAAGGCTGAGCTGG
AGAAGAGGAATGAGAAATTTGATGTCATTTTCGGAGATTTAGCTGACCCA
GTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTTCTACGAACG
AATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTACCCAGGCTG
GACCAACAGGCATTTTCACCCACAAAGAGGTGTTCTCATCCATTTACAAC
ACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGCTCATGTGCC
ATCTTTTGCAAAAACCTGGGGAATGGGTATGGCGTCAGACCACCCGTTCC
CTATCATGCTGAGGAAATCGACAACAGGATCAAGAACAAGGATATTGCTG
AATTACTCTTTCTAAATGGCCCTTCATTCTTCTCTCCTACACCAAGAACA
AGGCTTTTATTAACCCCGTTGAATAAAACTCATGTTTAACCCCGAGGAAA
AATGCAAAATTAATCCTTGGACATGGTGTGGGGCCTTAAATACAACCCAT
TAGAGTTCCTAATTAGCTCTTAAATGTGTTTGGGGGAAATTGCTGTAACA
AAAGAAAAAAAAAAGGCAAACCAATTTTATAAAGGGTTGGGAAATTAGGA
ATAGATTTTAAATTTATAAAAAACTTTTCCTNTTAAGAAAAACTACATTT
TGGGTTTAAAAAAACACCTTTTTGTTGTTTTTTTNATATACCACCAAAAT
A
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