DY305575

Overview
NameDY305575
Unique NameDY305575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_BACCN (Spermidine synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=speE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 77/225 (34.22%), Postives = 130/225 (57.78%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            WF E        +  +NR LH   +EFQ + +++T+ FG +L++DG + + E DEF+YHE + H PL  H NP+ V ++GGG+G   RE LKH S++   + +ID +V+++ +++L     A   +++ + V D    + +   ++DVI  D  +PV  GP   L+TK FY  I K  L ++GIFV Q      FT  E+ +++   +K++F     YTA++P++
Sbjct:    4 WFTEKQTKHFGITARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKKYLPSIAGALDHERVEVKVGDGFLHIAESENEYDVIMVDSTEPV--GPAVNLFTKGFYAGISK-ALKEDGIFVAQT-DNPWFT-PELITNVVKDVKEIFPITRLYTANIPTY 223          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE1_AQUAE (Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 84/259 (32.43%), Postives = 142/259 (54.83%), Query Frame = 1
Query:  118 LQDCCWFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTRI 894
            ++D  + E      ++  + ++++L++G S +Q+I ++++  FG++L++DG +Q  E  EF+YHE L H PL  H NP+ V I+GGG+G   RE LKH  +E  V+ DID+EV++  +++L      F   +  +V  D    ++    +FDVI  D  DPV  G  + L T+ F+  + K  L ++GIFV Q     I  H E+ S+I   +K+VF  V  YT+ +P +A  W     +   +P+         +T+I
Sbjct:    1 MRDIVFIERDPYAPIRHCYTVSKILYQGKSPYQEIQVIESPEFGRMLILDGVVQLDEKYEFLYHEYLAHVPLHAHPNPRNVLIIGGGDGGTLREVLKHDIVERAVLVDIDKEVIEVSKKYLPTLSVGFQDPRAIVVNEDGYKYVQDYENEFDVIIVDSTDPV--GFAHVLTTEDFFRHVYK-ALKEDGIFVAQT--ESIHYHLEMVSNIQQRLKKVFPIVDLYTSVIPIYAGYWWTFSIASKKYPVRTPAREVKVQTKI 254          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SHIDS (Spermidine synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=speE PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.181e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDLRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_PYRAR (Probable spermidine synthase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=speE PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.181e-36
Identity = 86/215 (40.00%), Postives = 126/215 (58.60%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVND----AKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            +N VL    S +Q+I +++T+ +G+ L++D  +QS+  DE  YHE L+HP ++ H  P+ V I+GGGEG+  RE LKH ++E  VM DID +VV+  +RFL  ++Q AF S +  +V+ D     K  LE+   KFDV+  DL DP       QLYT  F  +I+K  L  +GI VTQAG +  F   E +  + + +K  F  V  Y   +PSF
Sbjct:   24 VNEVLAVRRSRYQEIMVVETEDYGRALILDDYIQSSYYDEAFYHESLVHPAMVTHPAPRDVLILGGGEGATLREVLKHPTVEKAVMVDIDGDVVELSKRFLPQMHQGAFDSPRAEVVIEDGFVYVKRALEE-GRKFDVVIMDLTDPYSSEIAKQLYTAEFINQIMK-LLRGDGIMVTQAGNS--FYFPEAYDMVLSAVKANFPVVAEYNVWIPSF 234          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_CITK8 (Spermidine synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=speE PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.181e-36
Identity = 82/225 (36.44%), Postives = 129/225 (57.33%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   + NLV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFNLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSTFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEAIDSHRKLSHYFGDVSFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ENT38 (Spermidine synthase OS=Enterobacter sp. (strain 638) GN=speE PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.069e-35
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HKS+E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T SFYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVSRHKSIETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQSHQTFDVIISDCTDPI--GPGATLFTSSFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEAIDSHRKLSHYFGDVSFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ECO81 (Spermidine synthase OS=Escherichia coli O81 (strain ED1a) GN=speE PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.069e-35
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  +E     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPAGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SHIB3 (Spermidine synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=speE PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.396e-35
Identity = 82/225 (36.44%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++ES+ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN +GIFV Q G    F  +E     +  +   F  V  Y   +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPSGIFVAQNGV--CFLQQEEAIDSHRKLSHYFSDVGFYQTAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALAR (Spermidine synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=speE PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.380e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVSFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ERWT9 (Spermidine synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=speE PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.380e-35
Identity = 83/240 (34.58%), Postives = 136/240 (56.67%), Query Frame = 1
Query:  172 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPS-FAKTWGMGMASDHPFPIMLRKSTTGSR 885
            F++++++++  ++ QD+ + +    G+V+ +DG +Q+ E DEFIYHE + H PLL H  PK V I+GGG+G+  RE  +HK++E + M +ID  VV FCR++L   N  A+   +  LV++D    + + ++KFDVI  D  DP+  GP   L+T  FY+   +  LN +GIFV Q G    F  ++   + +  +   F  V  Y A +P+ +        ASD+P    L  +T  +R
Sbjct:   19 FSVDKIIYREKTDHQDLVIFENAALGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGAPKRVLIIGGGDGAMLREVCRHKNIEQITMVEIDAGVVTFCRQYLPNHNAGAYDDARFKLVIDDGVNFVNQTSDKFDVIISDCTDPI--GPGESLFTSEFYQG-CRRCLNQDGIFVAQNGV--CFLQQDEAVNSHRKLSHYFGDVSFYQAAIPTYYGGIMTFAWASDNPALRQLDMATLTAR 253          
The following BLAST results are available for this feature:
BLAST of DY305575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
SPEE_BACCN6.264e-3634.22Spermidine synthase OS=Bacillus cereus subsp. cyto... [more]
SPEE1_AQUAE6.264e-3632.43Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1... [more]
SPEE_SHIDS8.181e-3636.89Spermidine synthase OS=Shigella dysenteriae seroty... [more]
SPEE_PYRAR8.181e-3640.00Probable spermidine synthase OS=Pyrobaculum arsena... [more]
SPEE_CITK88.181e-3636.44Spermidine synthase OS=Citrobacter koseri (strain ... [more]
SPEE_ENT381.069e-3536.89Spermidine synthase OS=Enterobacter sp. (strain 63... [more]
SPEE_ECO811.069e-3536.89Spermidine synthase OS=Escherichia coli O81 (strai... [more]
SPEE_SHIB31.396e-3536.44Spermidine synthase OS=Shigella boydii serotype 18... [more]
SPEE_SALAR2.380e-3536.00Spermidine synthase OS=Salmonella arizonae (strain... [more]
SPEE_ERWT92.380e-3534.58Spermidine synthase OS=Erwinia tasmaniensis (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305575 ID=DY305575; Name=DY305575; organism=Citrus sinensis; type=EST; length=1251bp
GAGTTATCCCATTTCTGTGCTTCTAATTTGATCATGGGTACCGAGGCTGT
TGAGATCTTATTTGAAAATGGTTTCTCGAAGGTCTGCAATGATACGGATC
CAAATATCAATGGCAACCTCCAAGATTGCTGCTGGTTTGAGGAAGTCATT
GATGATGATCTCAAATGGTCCTTTGCTTTGAACAGAGTGCTGCATAAAGG
GACCAGCGAATTCCAGGATATTGCTCTTTTGGACACAAAGCGTTTTGGAA
AGGTGCTGGTGATTGATGGGAAGATGCAGAGTGCTGAAGTGGATGAATTT
ATTTATCATGAATGCTTGATCCACCCTCCCCTCTTGTGTCACCAGAATCC
CAAAACTGTATTCATAATGGGAGGTGGTGAAGGTTCTGCTGCGAGGGAAG
CTCTCAAGCACAAGTCTCTTGAGAGCGTGGTCATGTGTGACATCGACCAG
GAAGTAGTCGATTTCTGCCGCAGATTTCTGACAGTGAATCAAGAGGCATT
CTGCAGCAAGAAGCTTAATCTTGTTGTTAATGATGCCAAGGCTGAGCTGG
AGAAGAGGAATGAGAAATTTGATGTCATTTTCGGAGATTTAGCTGACCCA
GTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTTCTACGAACG
AATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTACCCAGGCTG
GACCAACAGGCATTTTCACCCACAAAGAGGTGTTCTCATCCATTTACAAC
ACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGCTCATGTGCC
ATCTTTTGCAAAAACCTGGGGAATGGGTATGGCGTCAGACCACCCGTTCC
CTATCATGCTGAGGAAATCGACAACAGGATCAAGAACAAGGATATTGCTG
AATTACTCTTTCTAAATGGCCCTTCATTCTTCTCTCCTACACCAAGAACA
AGGCTTTTATTAACCCCGTTGAATAAAACTCATGTTTAACCCCGAGGAAA
AATGCAAAATTAATCCTTGGACATGGTGTGGGGCCTTAAATACAACCCAT
TAGAGTTCCTAATTAGCTCTTAAATGTGTTTGGGGGAAATTGCTGTAACA
AAAGAAAAAAAAAAGGCAAACCAATTTTATAAAGGGTTGGGAAATTAGGA
ATAGATTTTAAATTTATAAAAAACTTTTCCTNTTAAGAAAAACTACATTT
TGGGTTTAAAAAAACACCTTTTTGTTGTTTTTTTNATATACCACCAAAAT
A
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