DY305575

Overview
NameDY305575
Unique NameDY305575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALTY (Spermidine synthase OS=Salmonella typhimurium GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226
[Close]
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALTI (Spermidine synthase OS=Salmonella typhi GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226
[Close]
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALSV (Spermidine synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226
[Close]
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALPK (Spermidine synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEAIDSHRKLSHYFSDVGFYQAAIPTY 226
[Close]
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALPC (Spermidine synthase OS=Salmonella paratyphi C (strain RKS4594) GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226
[Close]
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALPB (Spermidine synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226
[Close]
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALPA (Spermidine synthase OS=Salmonella paratyphi A GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEAIDSHRKLSHYFSDVGFYQAAIPTY 226
[Close]
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALNS (Spermidine synthase OS=Salmonella newport (strain SL254) GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226
[Close]
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALHS (Spermidine synthase OS=Salmonella heidelberg (strain SL476) GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226
[Close]
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALG2 (Spermidine synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226
The following BLAST results are available for this feature:
BLAST of DY305575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
SPEE_SALTY3.109e-3536.00Spermidine synthase OS=Salmonella typhimurium GN=s... [more]
SPEE_SALTI3.109e-3536.00Spermidine synthase OS=Salmonella typhi GN=speE PE... [more]
SPEE_SALSV3.109e-3536.00Spermidine synthase OS=Salmonella schwarzengrund (... [more]
SPEE_SALPK3.109e-3536.00Spermidine synthase OS=Salmonella paratyphi A (str... [more]
SPEE_SALPC3.109e-3536.00Spermidine synthase OS=Salmonella paratyphi C (str... [more]
SPEE_SALPB3.109e-3536.00Spermidine synthase OS=Salmonella paratyphi B (str... [more]
SPEE_SALPA3.109e-3536.00Spermidine synthase OS=Salmonella paratyphi A GN=s... [more]
SPEE_SALNS3.109e-3536.00Spermidine synthase OS=Salmonella newport (strain ... [more]
SPEE_SALHS3.109e-3536.00Spermidine synthase OS=Salmonella heidelberg (stra... [more]
SPEE_SALG23.109e-3536.00Spermidine synthase OS=Salmonella gallinarum (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1CA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305575 ID=DY305575; Name=DY305575; organism=Citrus sinensis; type=EST; length=1251bp
GAGTTATCCCATTTCTGTGCTTCTAATTTGATCATGGGTACCGAGGCTGT
TGAGATCTTATTTGAAAATGGTTTCTCGAAGGTCTGCAATGATACGGATC
CAAATATCAATGGCAACCTCCAAGATTGCTGCTGGTTTGAGGAAGTCATT
GATGATGATCTCAAATGGTCCTTTGCTTTGAACAGAGTGCTGCATAAAGG
GACCAGCGAATTCCAGGATATTGCTCTTTTGGACACAAAGCGTTTTGGAA
AGGTGCTGGTGATTGATGGGAAGATGCAGAGTGCTGAAGTGGATGAATTT
ATTTATCATGAATGCTTGATCCACCCTCCCCTCTTGTGTCACCAGAATCC
CAAAACTGTATTCATAATGGGAGGTGGTGAAGGTTCTGCTGCGAGGGAAG
CTCTCAAGCACAAGTCTCTTGAGAGCGTGGTCATGTGTGACATCGACCAG
GAAGTAGTCGATTTCTGCCGCAGATTTCTGACAGTGAATCAAGAGGCATT
CTGCAGCAAGAAGCTTAATCTTGTTGTTAATGATGCCAAGGCTGAGCTGG
AGAAGAGGAATGAGAAATTTGATGTCATTTTCGGAGATTTAGCTGACCCA
GTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTTCTACGAACG
AATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTACCCAGGCTG
GACCAACAGGCATTTTCACCCACAAAGAGGTGTTCTCATCCATTTACAAC
ACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGCTCATGTGCC
ATCTTTTGCAAAAACCTGGGGAATGGGTATGGCGTCAGACCACCCGTTCC
CTATCATGCTGAGGAAATCGACAACAGGATCAAGAACAAGGATATTGCTG
AATTACTCTTTCTAAATGGCCCTTCATTCTTCTCTCCTACACCAAGAACA
AGGCTTTTATTAACCCCGTTGAATAAAACTCATGTTTAACCCCGAGGAAA
AATGCAAAATTAATCCTTGGACATGGTGTGGGGCCTTAAATACAACCCAT
TAGAGTTCCTAATTAGCTCTTAAATGTGTTTGGGGGAAATTGCTGTAACA
AAAGAAAAAAAAAAGGCAAACCAATTTTATAAAGGGTTGGGAAATTAGGA
ATAGATTTTAAATTTATAAAAAACTTTTCCTNTTAAGAAAAACTACATTT
TGGGTTTAAAAAAACACCTTTTTGTTGTTTTTTTNATATACCACCAAAAT
A
back to top