DY305575

Overview
NameDY305575
Unique NameDY305575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALEP (Spermidine synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALDC (Spermidine synthase OS=Salmonella dublin (strain CT_02021853) GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALCH (Spermidine synthase OS=Salmonella choleraesuis GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SALA4 (Spermidine synthase OS=Salmonella agona (strain SL483) GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            + E + D     FA++ VL+   ++ QD+ + +   FG+V+ +DG +Q+ E DEFIYHE + H PLL H + K V I+GGG+G+  RE  +HK++E++ M +ID  VV FCR++L   N  ++   +  LV++D    + + ++ FDVI  D  DP+  GP   L+T +FYE   K  LN  GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGV--CFLQQDEALDSHRKLSHYFSDVGFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_PYRKO (Probable spermidine synthase OS=Pyrococcus kodakaraensis GN=speE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 84/234 (35.90%), Postives = 133/234 (56.84%), Query Frame = 1
Query:  172 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFC------SKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWG--MGMASDHPF 849
            F + R L +  +E+Q + + +T+ FGK+LV+DG +Q  EV E  YHE L+HP +L H NP+ V ++GGG+G   RE L+H ++E  +M +ID+ VV+    +L V ++           +  L++ D    L + +E+FDVI  D  DPV  GP   L+++ FY R    KLN+ G++VTQAG   +FT++      Y  +K+VF  V  ++  V  +A  W   +G+  D  F
Sbjct:   22 FKVKRRLFETQTEYQRLEIYETEGFGKLLVLDGTVQLVEVGEESYHEVLVHPVMLAHPNPRKVLVIGGGDGGTLREVLRHDTVEKAIMVEIDEGVVEASYLYLDVAKDLLDRLIKKEEPRAELIIGDGVKYLRETDERFDVIIVDSTDPV--GPAKLLFSEEFY-RDAYEKLNEKGLYVTQAGSVYLFTNE--LLDAYKAMKKVFDRVYYFSFPVIGYASPWSFLVGVKGDVDF 250          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_ERWCT (Spermidine synthase OS=Erwinia carotovora subsp. atroseptica GN=speE PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 4.060e-35
Identity = 81/226 (35.84%), Postives = 128/226 (56.64%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQE-AFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            W+E  +  +    F+++RVL+   ++ QD+ + +    G+V+ +DG +Q+ E DEFIYHE L H PLL H N K V I+GGG+G   RE  +H  +E + M +ID  VV+FCR++L  +   ++   + NLV++D    + + +EKFDVI  D  DP+  GP   L+T  FY+   +  LN+ GIFV Q G    F  ++     +  +   F  V  Y A +P++
Sbjct:    7 WYE-TLHANFGQYFSVDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVSRHHGVEQITMVEIDAGVVEFCRQYLPNHSAGSYDDPRFNLVIDDGVNFVRQCSEKFDVIISDCTDPI--GPGESLFTSDFYQGCAR-SLNEGGIFVAQNGV--CFLQQDEAIGSHKKLSHYFNDVSFYQAAIPTY 226          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_PYRHO (Probable spermidine synthase OS=Pyrococcus horikoshii GN=speE PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.926e-35
Identity = 85/223 (38.12%), Postives = 132/223 (59.19%), Query Frame = 1
Query:  169 SFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVN---QEAFCS---KKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTW 819
            +F + R + +  SE+Q I + +T+ FGK+L IDG +Q     E  YHE L+HP +L H NP+ V I+GGG+G A RE LKH+ +E V+M +ID++V++   +++ ++    E   S   +K  L++ D    +E+ N  FDVI  D  DPV  GP   L+++ FY+   +  LND GI+VTQAG   +FT  + F + Y  +++VF  V  Y+  V  +A  W
Sbjct:   17 AFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAMLAHPNPRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLSDKHEKGKLIIGDGVKFIEE-NSGFDVIIVDSTDPV--GPAEMLFSEEFYKNAYR-ALNDPGIYVTQAGSVYLFT--DEFLTAYRKMRKVFDKVYYYSFPVIGYASPW 233          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_DESAP (Spermidine synthase OS=Desulforudis audaxviator (strain MP104C) GN=speE PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.926e-35
Identity = 78/225 (34.67%), Postives = 125/225 (55.56%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            WF E  +D+   S+ +N  LH  T+ FQ +A+LDT  FG+ LV+DG +Q++ VDE++YHE + H PL  H +P+ V I+GGG+G   RE  KH S+E   + +ID+ V+   +++L      F S K  +V+ D    + +  + FD++  D  DP+  GP   L++  FY  I +  L D G+FV Q      + + ++   IY  I  +F     Y A +P++
Sbjct:    4 WFTEKQNDNFAISYRVNETLHTETTPFQHLAVLDTVPFGRTLVLDGIVQTSVVDEYVYHEMITHVPLNTHPDPRRVLIVGGGDGGTLREVTKHPSVEKATLVEIDERVIAASKKYLPELACGFDSPKAEVVIGDGIKYVAEHKKTFDLVIVDSTDPI--GPAVGLFSLEFYRSIYE-ALKDEGLFVAQT--ESPYFNTDLILRIYRDIAGIFPLARTYWACIPTY 223          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE1_PSEAE (Spermidine synthase 1 OS=Pseudomonas aeruginosa GN=speE1 PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 6.926e-35
Identity = 85/225 (37.78%), Postives = 130/225 (57.78%), Query Frame = 1
Query:  136 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 807
            ++E +       F+++ +LH+  +E Q + + +  R G+V+ +DG +Q+ E DEFIYHE L H P+L H   + V I+GGG+G   RE  KHKS+E + M +ID  VVD C+ FL   +Q AF   +LNLV++D    +    E+FDVI  D  DP+  GP   L++++FY+   +  LN+ GI VTQ G T     +EV ++   T   +F     Y A VP++
Sbjct:    4 YQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPI--GPGEVLFSENFYQ-ACRRCLNEGGILVTQNG-TPFMQLEEVRTTAART-DGLFADWHFYQAAVPTY 223          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SILST (Spermidine synthase OS=Silicibacter sp. (strain TM1040) GN=speE PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 9.046e-35
Identity = 86/236 (36.44%), Postives = 128/236 (54.24%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF-----AKTWG 822
            W  E + D    S  ++ + +   +E Q + +     FG+VL +D  +Q+ E D FIYHE L H P+L H   K V I+GGG+G  ARE LKH S+E V M +ID  VVDF + +L  ++Q AF   +LNLV+ND    +++  +KFDVI  D  DP+  GP   L+T +FY    +  L ++GI VTQ G    F   +  ++     + +F+    Y A +P++     A  WG
Sbjct:    6 WNTERLHDHFAQSLRVSEMYYDSKTEHQRLKVFQNGTFGRVLTLDDVVQTTEGDNFIYHEMLTHVPILAHGAAKRVLIIGGGDGGIAREVLKHASVEHVTMVEIDAGVVDFSKEYLPMLSQGAFDDARLNLVINDGAVFMKETEDKFDVIIVDSTDPI--GPGEVLFTDTFYGHAAR-ALTEDGIIVTQNGVP--FMQGDELTNTMRAFQALFQDATCYLATIPTYVGGPMALGWG 236          
The following BLAST results are available for this feature:
BLAST of DY305575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
SPEE_SALEP3.109e-3536.00Spermidine synthase OS=Salmonella enteritidis PT4 ... [more]
SPEE_SALDC3.109e-3536.00Spermidine synthase OS=Salmonella dublin (strain C... [more]
SPEE_SALCH3.109e-3536.00Spermidine synthase OS=Salmonella choleraesuis GN=... [more]
SPEE_SALA43.109e-3536.00Spermidine synthase OS=Salmonella agona (strain SL... [more]
SPEE_PYRKO3.109e-3535.90Probable spermidine synthase OS=Pyrococcus kodakar... [more]
SPEE_ERWCT4.060e-3535.84Spermidine synthase OS=Erwinia carotovora subsp. a... [more]
SPEE_PYRHO6.926e-3538.12Probable spermidine synthase OS=Pyrococcus horikos... [more]
SPEE_DESAP6.926e-3534.67Spermidine synthase OS=Desulforudis audaxviator (s... [more]
SPEE1_PSEAE6.926e-3537.78Spermidine synthase 1 OS=Pseudomonas aeruginosa GN... [more]
SPEE_SILST9.046e-3536.44Spermidine synthase OS=Silicibacter sp. (strain TM... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305575 ID=DY305575; Name=DY305575; organism=Citrus sinensis; type=EST; length=1251bp
GAGTTATCCCATTTCTGTGCTTCTAATTTGATCATGGGTACCGAGGCTGT
TGAGATCTTATTTGAAAATGGTTTCTCGAAGGTCTGCAATGATACGGATC
CAAATATCAATGGCAACCTCCAAGATTGCTGCTGGTTTGAGGAAGTCATT
GATGATGATCTCAAATGGTCCTTTGCTTTGAACAGAGTGCTGCATAAAGG
GACCAGCGAATTCCAGGATATTGCTCTTTTGGACACAAAGCGTTTTGGAA
AGGTGCTGGTGATTGATGGGAAGATGCAGAGTGCTGAAGTGGATGAATTT
ATTTATCATGAATGCTTGATCCACCCTCCCCTCTTGTGTCACCAGAATCC
CAAAACTGTATTCATAATGGGAGGTGGTGAAGGTTCTGCTGCGAGGGAAG
CTCTCAAGCACAAGTCTCTTGAGAGCGTGGTCATGTGTGACATCGACCAG
GAAGTAGTCGATTTCTGCCGCAGATTTCTGACAGTGAATCAAGAGGCATT
CTGCAGCAAGAAGCTTAATCTTGTTGTTAATGATGCCAAGGCTGAGCTGG
AGAAGAGGAATGAGAAATTTGATGTCATTTTCGGAGATTTAGCTGACCCA
GTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTTCTACGAACG
AATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTACCCAGGCTG
GACCAACAGGCATTTTCACCCACAAAGAGGTGTTCTCATCCATTTACAAC
ACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGCTCATGTGCC
ATCTTTTGCAAAAACCTGGGGAATGGGTATGGCGTCAGACCACCCGTTCC
CTATCATGCTGAGGAAATCGACAACAGGATCAAGAACAAGGATATTGCTG
AATTACTCTTTCTAAATGGCCCTTCATTCTTCTCTCCTACACCAAGAACA
AGGCTTTTATTAACCCCGTTGAATAAAACTCATGTTTAACCCCGAGGAAA
AATGCAAAATTAATCCTTGGACATGGTGTGGGGCCTTAAATACAACCCAT
TAGAGTTCCTAATTAGCTCTTAAATGTGTTTGGGGGAAATTGCTGTAACA
AAAGAAAAAAAAAAGGCAAACCAATTTTATAAAGGGTTGGGAAATTAGGA
ATAGATTTTAAATTTATAAAAAACTTTTCCTNTTAAGAAAAACTACATTT
TGGGTTTAAAAAAACACCTTTTTGTTGTTTTTTTNATATACCACCAAAAT
A
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