DY305572

Overview
NameDY305572
Unique NameDY305572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1292
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 5.522e-43
Identity = 104/237 (43.88%), Postives = 138/237 (58.23%), Query Frame = 3
Query:  123 ILVTGGAGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTK-FDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIH 827
            ILV GGAGYIGSH V +L+  G  + VVVD+L      AV    +          F++ DL D+  +  +F +    DAVIHFA    V ES++KPL YFDNN  G I LLEVM+  G K +VFSS+A  YG P  +P  E  P   +NPYG +KL +E I +   R+    K + LRYFN  GA P G IGED      +L+P + Q+A G R  + +FG+DY+  +GT VR+Y+H
Sbjct:    3 ILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAVHPAAK----------FYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIPDEIPIKETTPQRPINPYGESKLMMETIMKWSDRAYG-IKFVPLRYFNVAGAKPDGSIGED-HSPETHLLPIILQVAQGVREKIMIFGDDYNTPDGTNVRDYVH 227          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: EXOB_RHILT (UDP-glucose 4-epimerase OS=Rhizobium leguminosarum bv. trifolii GN=exoB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 7.212e-43
Identity = 101/238 (42.44%), Postives = 135/238 (56.72%), Query Frame = 3
Query:  117 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHV 830
            + +LV GGAGYIGSHT L L   GY+ VV DN  N     V       G           D+RD+A L+ + AK K  A++HFA L  VGESV+ P+ +++NN+IGT+TLL    A G    VFSS+   YG P+ VP  E      +NPYGRTK  +E+   D  +  S  + ++LRYFN  GA   G+IGE  +    + +P     A+GRR    VFG+DY  ++GT VR+YIHV
Sbjct:    4 ETVLVVGGAGYIGSHTCLDLANKGYRPVVFDNFSNGHREFVRWGPAEEG-----------DIRDRARLDEVLAKHKPAAILHFAALIEVGESVKDPVSFYENNVIGTLTLLSAAQAAGINAFVFSSTCATYGLPQSVPLDETHRQVPINPYGRTKYIVEQALADYDQYGS-LRSVVLRYFNAAGADFEGRIGEWHQP-ETHAIPLAIDAALGRRQGFKVFGSDYETRDGTCVRDYIHV 228          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.580e-42
Identity = 99/236 (41.95%), Postives = 133/236 (56.36%), Query Frame = 3
Query:  123 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHV 830
            +LV GGAGYIGSH V +L+  G   +V+D L      AV               F++ D+ D   +  +    K DAV+HFA    V ESV+KPL Y+DNN+ G I+LL+ M     K LVFSSSA  YG PK +P TE+ PL  +NPYG TK+ +E+I     ++D   K   LRYFN  GA   G IGED      +L+P + + A+      T+FG+DY  K+GT VR+Y+ V
Sbjct:    3 VLVIGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAV----------DPKAKFYQGDIEDTFLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFSSSAATYGIPKKLPITEDTPLNPINPYGETKMMMEKIMAWADKADG-IKYTALRYFNVAGASSDGSIGED-HAPETHLIPNILKSAISGDGKFTIFGDDYDTKDGTNVRDYVQV 226          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 2.565e-40
Identity = 94/240 (39.17%), Postives = 136/240 (56.67%), Query Frame = 3
Query:  120 NILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPR---GIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHV 830
            ++LVTGGAGYIGSH  L+LL   Y+  +VDNL   +  AV  ++ L    G  + F   DL D  A++ +F++  FDAV+HFA +  VGES   PL Y+ N    T+ +LE +A H  K L++SS+   YG P  +P  E  P   +NPYG+ K   E++  D  + +S+  +++LRYFN +G+ P G++GE P+        +       A G  P L V G DY   +GT VR+YI V
Sbjct:   71 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNLGAVKVLQGLFPEPG-RLQFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAVARHKVKKLIYSSTCATYGEPDKMPIVEVTPQVPINPYGKAKKMAEDMILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAARGVIPGLQVKGTDYKTGDGTCVRDYIDV 308          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: GALE_CORGL (UDP-glucose 4-epimerase OS=Corynebacterium glutamicum GN=galE PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 5.715e-40
Identity = 101/261 (38.70%), Postives = 146/261 (55.94%), Query Frame = 3
Query:  123 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAV-AKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVNKHN*RAKLLALQKPEDPKKKL*N 902
            +LVTGGAGY+GS     LL  G+   ++DN    +  AV A  + + G+  D              +E + ++  F+ V+HFA    VGESV+KP  Y+ +N++  +TLL+ M AHG  NLVFSS+A  YG P VVP TE+ P +  N YG TKL I+      + +        LRYFN  GA+  G IGE+ R +  +L+P V Q+A G R    +FG+D+   +GT VR+YIH+     +A +LAL+  E  K ++ N
Sbjct:    3 LLVTGGAGYVGSVAAAVLLEHGHDVTIIDNFSTGNREAVPADARLIEGDVND-------------VVEEVLSEGGFEGVVHFAARSLVGESVEKPNEYWHDNVVTALTLLDAMRAHGVNNLVFSSTAATYGEPDVVPITEDMPTQPTNAYGATKLSIDYAITS-YAAAFGLAATSLRYFNVAGAY--GNIGEN-REVETHLIPLVLQVATGHREKTFMFGDDWPTPDGTAVRDYIHILDLA-KAHVLALESNEAGKHRIFN 245          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.273e-39
Identity = 100/260 (38.46%), Postives = 150/260 (57.69%), Query Frame = 3
Query:  123 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVNKHN*RAKLLALQKPEDPKKKL*N 902
            +LVTGGAGY+GS     LL  G++  +VDNL   +  AV              TF + D++D A  + + +   FDAV+HFA    VGESV+KP  Y+ +N++ T+ LL+ M  +  +N+VFSS+A  YG P+ VP TE+ P    NPYG TKL I+        +   +    LRYFN  GA+  G +GE+ R I  +L+P V Q+A+G R  + +FG+D+  ++GT +R+YIH+ +    A +LALQ   +   ++ N
Sbjct:    3 LLVTGGAGYVGSVCSTVLLEQGHEVTIVDNLTTGNRDAVPL----------GATFVEGDIKDVA--DNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNVRNIVFSSTAATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYG-FAATSLRYFNVAGAY--GLVGEN-REIETHLIPLVLQVALGHRDKIFMFGDDWPTEDGTPIRDYIHI-RDLADAHILALQSNVEGSHRIFN 245          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: GALE_STRTR (UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.408e-38
Identity = 100/239 (41.84%), Postives = 137/239 (57.32%), Query Frame = 3
Query:  123 ILVTGGAGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTK-FDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEW--KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIH 827
            ILV GGAGYIGSH V +L+  G  K VVVD+L      AV            +  F++ DL D+  +  +F +    DAVIHFA    VGES++KPL YFDNN  G + LLEVM   G K +VFSS+A  YG P+ +P  E  P   +NPYG +KL +E I +    SD  +  K + LRYFN  GA+   ++         +L+P + Q+A G R  + +FG+DY+  +GT VR+Y+H
Sbjct:    3 ILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAVHP----------DAIFYQGDLSDQDFMRKVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTAATYGIPEEIPILETTPQNPINPYGESKLMMETIMK---WSDQAYGIKYVPLRYFNVAGANLMVRLVRTRS--ETHLLPIILQVAQGVREKIMIFGDDYNTPDGTNVRDYVH 226          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: EXOB_AZOBR (UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.408e-38
Identity = 92/237 (38.82%), Postives = 129/237 (54.43%), Query Frame = 3
Query:  123 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVN 833
            +LVTGGAGYIGSH +  L   G   V +D+L      A+     L             D+     L+ +    + DAV+HFAG   V ESV KPL Y+ NN   ++TLL      G   +VFSS+A VYG P+ VP  E+ P   +NPYG +KL  E++ RD   +    + ++LRYFN  GA P+G+ G+    +  +L+    Q  +GRRP L +FG DY   +GT +R+YIHV+
Sbjct:   11 VLVTGGAGYIGSHVLHALTDAGIPAVTIDDLSAGRREAIPAAVPLVEG----------DIGSAELLDRVMRDHRVDAVMHFAGSIVVPESVVKPLDYYRNNTANSLTLLGACLRAGIDKVVFSSTAAVYGAPESVPIREDAPTVPINPYGASKLMTEQMLRDAGAAHG-LRSVILRYFNVAGADPAGRTGQ-ATPVATHLIKVACQALLGRRPPLAIFGTDYDTPDGTCIRDYIHVS 235          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 3.833e-36
Identity = 92/241 (38.17%), Postives = 132/241 (54.77%), Query Frame = 3
Query:  111 MAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALF-AKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHV 830
            M+   LVTGGAGY+GS     L+  G + VV+ NL       V              +F++ D+RD+  +  +F  +  FD V+HFA    VGESV KP  Y+DNN+ GT+ LLE M   G + LVFSS+A  YG P+ VP  E  P    NPYG +KL ++ +      +      + + YFN  GA+   ++  DP    ++L+P V Q+A GRR  ++V+G+DY   + T VR+YIHV
Sbjct:    1 MSGKYLVTGGAGYVGSVVAQHLVEAGNEVVVLHNLSTGFRAGVPA----------GASFYRGDIRDQDFMRKVFRGRLSFDGVLHFAAFSQVGESVVKPEKYWDNNVGGTMALLEAMRGAGVRRLVFSSTAATYGEPEQVPIVESAPTRPTNPYGASKLAVDHMITG-EAAAHGLGAVSVPYFNVAGANRGVRLVHDPE---SHLIPLVLQVAQGRREAISVYGDDYPTPD-TCVRDYIHV 226          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: GALE_KLEPN (UDP-glucose 4-epimerase (Fragment) OS=Klebsiella pneumoniae GN=galE PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.407e-30
Identity = 69/139 (49.64%), Postives = 94/139 (67.63%), Query Frame = 3
Query:  123 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTE 539
            +LVTGG+GYIGSHT +QLL  G++ V++DNL N+    +  ++ L G +    TF + D+R++A +  +      +AVIHFAGLKAVGESV KPL Y+DNN+ GT+ L+  M A G KN +FSSSATVYG    +P  E
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQRGHEVVILDNLCNSKRRILPVIERLGGKEA---TFIEGDIRNEARMTEILHDHAIEAVIHFAGLKAVGESVAKPLEYYDNNVTGTLKLVSAMRAAGVKNFIFSSSATVYGDQPKIPYVE 138          
The following BLAST results are available for this feature:
BLAST of DY305572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
GALE_STRMU5.522e-4343.88UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]
EXOB_RHILT7.212e-4342.44UDP-glucose 4-epimerase OS=Rhizobium leguminosarum... [more]
GALE_LACHE3.580e-4241.95UDP-glucose 4-epimerase OS=Lactobacillus helveticu... [more]
ARAE3_ARATH2.565e-4039.17Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]
GALE_CORGL5.715e-4038.70UDP-glucose 4-epimerase OS=Corynebacterium glutami... [more]
GALE_CORDI1.273e-3938.46UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
GALE_STRTR1.408e-3841.84UDP-glucose 4-epimerase OS=Streptococcus thermophi... [more]
EXOB_AZOBR1.408e-3838.82UDP-glucose 4-epimerase OS=Azospirillum brasilense... [more]
GALE_STRLI3.833e-3638.17UDP-glucose 4-epimerase OS=Streptomyces lividans G... [more]
GALE_KLEPN2.407e-3049.64UDP-glucose 4-epimerase (Fragment) OS=Klebsiella p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305572 ID=DY305572; Name=DY305572; organism=Citrus sinensis; type=EST; length=1292bp
CCAAGCCCAAGTCTCATCACTTCCTTCGTAATTCCCCCGTTTCTTCAATT
TTTCGTGTACTTTGTTCCTTTTTTTTTTGGTTCTTCTGATTGGTCTCTCC
GTTAGACTCCATGGCTAAGAACATTTTGGTGACCGGTGGCGCCGGTTACA
TTGGAAGCCACACCGTGCTTCAGTTGCTGTTAGGCGGTTACAAAACTGTC
GTCGTTGACAATCTCGATAATGCCTCGGAAATCGCCGTCGCAAAAGTCAA
AGAACTCGCTGGCAATCAAGGCGACAACATGACCTTTCATAAGTTGGATC
TCCGAGACAAAGCAGCGCTGGAAGCATTGTTTGCCAAAACAAAGTTCGAT
GCTGTCATCCATTTTGCTGGACTGAAAGCAGTTGGTGAAAGTGTGCAAAA
ACCATTGCTGTATTTTGACAACAATCTTATTGGAACCATAACTCTCTTGG
AAGTTATGGCAGCACATGGCTGCAAAAATCTGGTCTTTTCATCATCAGCT
ACTGTTTATGGCTGGCCAAAGGTGGTTCCGTGTACAGAAGAGTTCCCGTT
AGAGGCAATGAACCCTTATGGACGTACCAAGCTTTTCATTGAAGAGATTT
GCCGTGATGTCCACCGCTCAGACTCTGAATGGAAGATCATATTGCTGAGA
TATTTCAATCCTGTTGGTGCACATCCAAGTGGCAAAATTGGTGAGGATCC
CCGTGGAATTCCAAACAATCTCATGCCCTTCGTCACTCAAATTGCTGTTG
GCAGGCGTCCAAACCTGACAGTATTTGGAAATGATTACTCAAAAAAAGAA
GGTACTGGGGTCCGTGAATACATTCATGTTAATAAACATAACTAAAGGGC
AAAATTGCTGGCATTGCAAAAACCTGAAGATCCCAAAAAAAAGTTGTGAA
ATGAAAAACATTGGAAAACGGAAAAAAAAAAATCTTTTTTGTAAAATGTT
TACAACTTTTGAAAAACCCTCTGGAAAAAAAAATTCCCCTTTAAAAGTTT
GGGGAAGGAAACACCAAAAACACAAAAATTATATAAGCTATAAAAGAAAA
CGCAAAAGATAAAATTATTAAAAAAAAGAAAAAAGTGGATTCAAAAAATA
TTTAAAAAATACTTAAAAATTAGGCACATACCAAACACTATTTCTCTCAA
TAAGTATATCACATTAAATAAAGCATAATAAAAAATTACATTATATGACC
CCAATAAAATAAATAATAACTACCACAAAAAAAAAAAGATATAAACTACT
GAAAAGCTAATATATATAAATATTTACATAAAATATATTATA
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