DY305572

Overview
NameDY305572
Unique NameDY305572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1292
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.047e-13
Identity = 57/192 (29.69%), Postives = 87/192 (45.31%), Query Frame = 3
Query:   99 PLDSMAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 674
            P  S AK +LVTGGAG+I SH ++ L+   Y   ++ NLD     A  K  E   N+  N  F + D+ D   ++ LF   K D V+HFA    V  S  +   +   N+ GT  L+      G +  ++ S+  VYG        E  P +  NPY  +K   E   +  +    ++ +++ R  N  G H
Sbjct:   12 PPGSFAKRVLVTGGAGFIASHVIVSLV-EDYPDYMIVNLDKLDYCASLKNLEPVSNK-QNYKFIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVEKFIYVSTDEVYGGSLDQEFDESSPKQPTNPYASSKAAAECFVQS-YWERYKFPVVITRSSNVYGPH 200          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: STRE_STRGR (dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.263e-12
Identity = 73/246 (29.67%), Postives = 108/246 (43.90%), Query Frame = 3
Query:  111 MAKNILVTGGAGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGNQGD-NMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMP-FVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVNKH 839
            M  ++LVTG AG+IGS  V  LL  GG   VVV  LD  +         LA  +G     F + D+ D      +  +   D V+H A    V  S+    ++   N+ GT TLL+    HG  + V  S+  VYG  +    TE+ PL   +PY  +K    ++    H       + + R  N  G          PR  P  L+P F+T +  G R  + ++G      +G  VRE++HV+ H
Sbjct:    1 MTTHLLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTY--AGNPDNLAAVRGHPRYRFERGDICDAPGRRVMAGQ---DQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQVSTDEVYGSLEHGSWTEDEPLRPNSPYSASKA-SGDLLALAHHVSHGLDVRVTRCSNNYG----------PRQFPEKLIPRFITLLMDGHR--VPLYG------DGLNVREWLHVDDH 222          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.860e-12
Identity = 54/187 (28.88%), Postives = 84/187 (44.92%), Query Frame = 3
Query:  114 AKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 674
            AK +LVTGGAG+I SH ++ L+   Y   ++ NLD     A  K  E   N+  N  F + D+ D   ++ LF   K D V+HFA    V  S  +   +   N+ GT  L+        +  ++ S+  VYG        E  P +  NPY  +K   E   +  +    ++ +++ R  N  G H
Sbjct:   17 AKRVLVTGGAGFIASHMIVSLV-EDYPNYMIINLDKLDYCASLKNLETISNK-QNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQS-YWEQYKFPVVITRSSNVYGPH 200          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: RFBB_NEIGO (dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.041e-12
Identity = 72/253 (28.46%), Postives = 115/253 (45.45%), Query Frame = 3
Query:  117 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA-VAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAH-----GCKNLVFS----SSATVYGWPKVVP--CTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVNKH 839
            KNILVTGGAG+IGS  V  ++     +VV  NLD  +    +  + ++A N      F ++D+ D+A L+ +FA+ + DAV+H A    V  ++     +   N++GT  LLE   A+       K   F     S+  VYG         TE  P    +PY  +K   + + R   R+     I+         ++ S   G  PR  P  L+P +   A+  +P L V+G      +G  +R+++ V  H
Sbjct:    7 KNILVTGGAGFIGSAVVRHIIQNTRDSVV--NLDKLTYAGNLESLTDIADNP--RYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEKREAFRFHHISTDEVYGDLHGTDDLFTETTPYAPSSPYSASKAAADHLVRAWQRTYRLPSIV---------SNCSNNYG--PRQFPEKLIPLMILNALSGKP-LPVYG------DGAQIRDWLFVEDH 237          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.599e-12
Identity = 71/249 (28.51%), Postives = 110/249 (44.18%), Query Frame = 3
Query:  126 LVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVM---------AAHGCKNLVFSSSATVYG-WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPV-GAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVNKH 839
            LVTGGAG+IG + VL+ +  G + V +D L  A  +    +  L GN   +  F K D+ D A +  L  + + DAV++FA    V  S++ P  +   N++GT+ LLE +                 +  S+  VYG   +    TE  P    +PY  +K   + + R  H +          Y  PV   + S   G  P   P  L+P V   A+   P L V+G      +G  VR+++ V+ H
Sbjct:    5 LVTGGAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNT--LASLEGNA--DHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKFTETTPYAPNSPYSASKAASDHLVRAFHHT----------YGLPVLTTNCSNNYG--PYHFPEKLIPLVIAKALAGEP-LPVYG------DGKQVRDWLFVSDH 230          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: GNE_ECO57 (UDP-N-acetylglucosamine 4-epimerase OS=Escherichia coli O157:H7 GN=gne PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.599e-12
Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 3
Query:  111 MAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD-VHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGR 755
            M  N+L+ G +G++G+  +L+  +  +    + NLD        ++ ++             D+RD+ AL+   A   FD V+  A      + V    LY+D N+ GT  +L  M  +G KN++F+SS  VYG  K  P  E  P +  N YG++K   EE+ R+  +++ +E  + ++R        P+   GE  RG   N+   + QIA G+
Sbjct:    1 MNDNVLLIGASGFVGTR-LLETAIADFN---IKNLDKQQSHFYPEITQIG------------DVRDQQALDQALAG--FDTVVLLAAEHR--DDVSPTSLYYDVNVQGTRNVLAAMEKNGVKNIIFTSSVAVYGLNKHNP-DENHPHDPFNHYGKSKWQAEEVLREWYNKAPTERSLTIIR--------PTVIFGERNRG---NVYNLLKQIAGGK 184          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: RFFG_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rffG PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.467e-11
Identity = 71/254 (27.95%), Postives = 111/254 (43.70%), Query Frame = 3
Query:  117 KNILVTGGAGYIGSHTVLQLLLG-GYKTVVVDNLDNASEI-AVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAH-----GCKNLVFS----SSATVYGWPKVVP--CTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVNKH 839
            + IL+TGGAG+IGS  V  ++       VVVD L  A  + ++A V      Q +   F K+D+ D+A L  +F + + D V+H A    V  S+  P  + + N++GT TLLE   A+       K   F     S+  VYG         TE  P    +PY  +K   + + R        W    LR +       +      P   P  L+P +   A+  + +L V+GN      G  +R++++V  H
Sbjct:    2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVA-----QSERFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVR-------AW----LRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGK-SLPVYGN------GQQIRDWLYVEDH 232          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.502e-11
Identity = 72/244 (29.51%), Postives = 101/244 (41.39%), Query Frame = 3
Query:  117 KNILVTGGAGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGNQGD-NMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHG-CKNLVFSSSATVYG---WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIH 827
            KNIL+TG AG+I SH   +L+     YK VV+D LD  S +     K L  ++   N  F K D+     +  L    + D ++HFA    V  S      +  NN+ GT  LLE     G  +  +  S+  VYG       V   E   L   NPY  TK   E +     RS     +I  R  N  G          P   P  L+P    +A+  +P L + G      +G+ VR Y++
Sbjct:    7 KNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNL-----KNLNPSKSSPNFKFVKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG-LPVITTRGNNVYG----------PNQFPEKLIPKFILLAMNGKP-LPIHG------DGSNVRSYLY 227          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.502e-11
Identity = 71/244 (29.10%), Postives = 100/244 (40.98%), Query Frame = 3
Query:  117 KNILVTGGAGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGN-QGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHG-CKNLVFSSSATVYG---WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIH 827
            KNIL+TG AG+I SH   +L+     YK VV+D LD  S++     K L  +    N  F K D+     +  L      D ++HFA    V  S      +  NN+ GT  LLE     G  +  +  S+  VYG       V   E   L   NPY  TK   E +     RS     +I  R  N  G          P   P  ++P    +A+  +P L + G      +G+ VR Y++
Sbjct:    9 KNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDL-----KNLDPSFSSPNFKFVKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG-LPVITTRGNNVYG----------PNQFPEKMIPKFILLAMSGKP-LPIHG------DGSNVRSYLY 229          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: YFNG_BACSU (Putative sugar dehydratase/epimerase yfnG OS=Bacillus subtilis GN=yfnG PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.268e-11
Identity = 67/261 (25.67%), Postives = 111/261 (42.53%), Query Frame = 3
Query:  117 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHG-CKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFN----PVGAHPSGKIGEDPRGIPNNLMPFVTQIAV-GRRPNLTVFGNDYSKKEGTGVREYIHVNKHN*RAKLLALQKPED 881
            KN+ VTG  G +GS+ V +L+  G       N+       V +     G     M   +  L D A +E    + + D V H A    VG + + P+  F+ N++GT  +LE    H   K ++ +SS   YG  + +P  E  PL+  +PY      + + C D         +I   YF+    PV     G +        N ++P   Q+ + G  P +        + +GT VR+Y ++ +   +A LL  +K E+
Sbjct:    7 KNVFVTGCTGLLGSYLVKELIEQGA------NVTGLVRDHVPQSNLYQGEHIKKMNIVRGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPLIKRVIVASSDKAYGDQENLPYDENMPLQGKHPYD-----VSKSCAD---------LISHTYFHTYGLPVCITRCGNLYGGGDLNFNRIIPQTIQLVLNGEAPEI--------RSDGTFVRDYFYI-EDAVQAYLLLAEKMEE 238          
The following BLAST results are available for this feature:
BLAST of DY305572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
TGDS_MOUSE2.047e-1329.69dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]
STRE_STRGR2.263e-1229.67dTDP-glucose 4,6-dehydratase OS=Streptomyces grise... [more]
TGDS_HUMAN3.860e-1228.88dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
RFBB_NEIGO5.041e-1228.46dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrho... [more]
RFBB_XANCB8.599e-1228.51dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
GNE_ECO578.599e-1228.24UDP-N-acetylglucosamine 4-epimerase OS=Escherichia... [more]
RFFG_ECOLI1.467e-1127.95dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]
RHM3_ARATH2.502e-1129.51Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH2.502e-1129.10Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
YFNG_BACSU4.268e-1125.67Putative sugar dehydratase/epimerase yfnG OS=Bacil... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305572 ID=DY305572; Name=DY305572; organism=Citrus sinensis; type=EST; length=1292bp
CCAAGCCCAAGTCTCATCACTTCCTTCGTAATTCCCCCGTTTCTTCAATT
TTTCGTGTACTTTGTTCCTTTTTTTTTTGGTTCTTCTGATTGGTCTCTCC
GTTAGACTCCATGGCTAAGAACATTTTGGTGACCGGTGGCGCCGGTTACA
TTGGAAGCCACACCGTGCTTCAGTTGCTGTTAGGCGGTTACAAAACTGTC
GTCGTTGACAATCTCGATAATGCCTCGGAAATCGCCGTCGCAAAAGTCAA
AGAACTCGCTGGCAATCAAGGCGACAACATGACCTTTCATAAGTTGGATC
TCCGAGACAAAGCAGCGCTGGAAGCATTGTTTGCCAAAACAAAGTTCGAT
GCTGTCATCCATTTTGCTGGACTGAAAGCAGTTGGTGAAAGTGTGCAAAA
ACCATTGCTGTATTTTGACAACAATCTTATTGGAACCATAACTCTCTTGG
AAGTTATGGCAGCACATGGCTGCAAAAATCTGGTCTTTTCATCATCAGCT
ACTGTTTATGGCTGGCCAAAGGTGGTTCCGTGTACAGAAGAGTTCCCGTT
AGAGGCAATGAACCCTTATGGACGTACCAAGCTTTTCATTGAAGAGATTT
GCCGTGATGTCCACCGCTCAGACTCTGAATGGAAGATCATATTGCTGAGA
TATTTCAATCCTGTTGGTGCACATCCAAGTGGCAAAATTGGTGAGGATCC
CCGTGGAATTCCAAACAATCTCATGCCCTTCGTCACTCAAATTGCTGTTG
GCAGGCGTCCAAACCTGACAGTATTTGGAAATGATTACTCAAAAAAAGAA
GGTACTGGGGTCCGTGAATACATTCATGTTAATAAACATAACTAAAGGGC
AAAATTGCTGGCATTGCAAAAACCTGAAGATCCCAAAAAAAAGTTGTGAA
ATGAAAAACATTGGAAAACGGAAAAAAAAAAATCTTTTTTGTAAAATGTT
TACAACTTTTGAAAAACCCTCTGGAAAAAAAAATTCCCCTTTAAAAGTTT
GGGGAAGGAAACACCAAAAACACAAAAATTATATAAGCTATAAAAGAAAA
CGCAAAAGATAAAATTATTAAAAAAAAGAAAAAAGTGGATTCAAAAAATA
TTTAAAAAATACTTAAAAATTAGGCACATACCAAACACTATTTCTCTCAA
TAAGTATATCACATTAAATAAAGCATAATAAAAAATTACATTATATGACC
CCAATAAAATAAATAATAACTACCACAAAAAAAAAAAGATATAAACTACT
GAAAAGCTAATATATATAAATATTTACATAAAATATATTATA
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