DY305572

Overview
NameDY305572
Unique NameDY305572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1292
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.268e-11
Identity = 61/227 (26.87%), Postives = 105/227 (46.26%), Query Frame = 3
Query:  117 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEF-----PLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGN 782
            K IL+TGGAG++GSH   +L++ G++  VVDN     +     V+   G++   +  H +       +E L+ +   D + H A   +    +  P+     N IGT+ +L +    G + L+ +S++ VYG P+V P +EE+     P+     Y   K   E +C    + +   ++ + R FN  G         D R + N    F+ Q   G +  LTV+G+
Sbjct:   90 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK---RNVEHWIGHENFELINHDV-------VEPLYIEV--DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR-LLLASTSEVYGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGV-EVRVARIFNTFGPRMH---MNDGRVVSN----FILQALQGEQ--LTVYGS 293          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: RFFG_HAEIN (dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae GN=rffG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.268e-11
Identity = 72/263 (27.38%), Postives = 118/263 (44.87%), Query Frame = 3
Query:  120 NILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA-VAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAH-----GCKNLVFS----SSATVYGWPKV--VPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVNKHN*RAKLLALQK 872
            NILVTGG+G+IGS  +  ++   +    V N+D  +  A  + ++E+  N      F K+D+ D   +E +F K + DAV+H A    V  S+     +   N++GT TLLEV   +       K   F     S+  VYG   +     TE+ P    +PY  +K     + +  HR+     +I+    N  GA+   +           L+P +   AV  +P L ++G      +G  +R+++ V  H  +A  L L K
Sbjct:    3 NILVTGGSGFIGSALIRYII--NHTQDFVINIDKLTYAANQSALREVENNP--RYVFEKVDICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDEAKKTTFRFHHISTDEVYGDLSLSEPAFTEQSPYHPSSPYSASKAASNHLVQAWHRTYG-LPVIITNSSNNYGAYQHAE----------KLIPLMISNAVMGKP-LPIYG------DGQQIRDWLFVEDHV-QASYLVLTK 242          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.574e-11
Identity = 44/157 (28.03%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  126 LVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTE-EFPLEAMNPYGRTKLFIE 593
            L+TG AG+IG H   +L+  G+  V  D +    ++ + + +     + +        L D+AAL+      + + +IH A    V  S++ P  Y D NL+G+  +LE+  A   K+L+ +S++++YG  + +P  E +   E M  Y  TK  +E
Sbjct:    4 LITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTAMLEDRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPKHLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSME 160          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.574e-11
Identity = 52/163 (31.90%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  120 NILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKE-LAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEV-MAAHGCKNLVFSSSATVYGWPKVVPCTE-EFPLEAMNPYGRTKLFIEEI 599
            ++LVTG  G++GSH  L L   G   V +DN +N  + ++ + +  L  ++G  +   + DL D   L  LF    F  V+H A    V  +++ P  Y  +N+ G + LLE+  AA+    +V++SS++VYG  + VP +E +   +  + Y  TK   EEI
Sbjct:   89 SVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLKRARRSLLSSRGIFVV--EGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGEEI 249          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.280e-11
Identity = 70/249 (28.11%), Postives = 109/249 (43.78%), Query Frame = 3
Query:  126 LVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVM---------AAHGCKNLVFSSSATVYG-WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPV-GAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVNKH 839
            LVTG AG+IG + VL+ +  G + V +D L  A  +    +  L GN   +  F K D+ D A +  L  + + DAV++FA    V  S++ P  +   N++GT+ LLE +                 +  S+  VYG   +    TE  P    +PY  +K   + + R  H +          Y  PV   + S   G  P   P  L+P V   A+   P L V+G      +G  VR+++ V+ H
Sbjct:    5 LVTGRAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNT--LASLEGNA--DHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKFTETTPYAPNSPYSASKAASDHLVRAFHHT----------YGLPVLTTNCSNNYG--PYHFPEKLIPLVIAKALAGEP-LPVYG------DGKQVRDWLFVSDH 230          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMB (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B GN=rfbB1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.280e-11
Identity = 73/254 (28.74%), Postives = 110/254 (43.31%), Query Frame = 3
Query:  117 KNILVTGGAGYIGSHTVLQLLLGGYKTVV-VDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAA---------HGCKNLVFSSSATVYGWPKVVP--CTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNP-VGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVNKH 839
            + ILVTGGAG+IGS  V  ++      VV VD L  A  +    + E+A N      F ++D+ D+A L+ +FA+ + DAV+H A    V  S+     +   N++GT  LLE   A         H        S+  VYG         TE  P    +PY  +K   + + R        W   L  Y  P +  + S   G  P   P  L+P +   A+  +P L V+G      +G  +R+++ V  H
Sbjct:    2 RKILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAGNLE--SLTEVADNP--RYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPYSASKASSDHLVR-------AW---LRTYGLPTIVTNCSNNYG--PYHFPEKLIPLMILNALDGKP-LPVYG------DGMQIRDWLFVEDH 232          
BLAST of DY305572 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMA (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A GN=rfbB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.508e-11
Identity = 71/254 (27.95%), Postives = 111/254 (43.70%), Query Frame = 3
Query:  117 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA-VAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAA---------HGCKNLVFSSSATVYGWPKVVP--CTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNP-VGAHPSGKIGEDPRGIPNNLMPFVTQIAVGRRPNLTVFGNDYSKKEGTGVREYIHVNKH 839
            + ILVTGGAG+IGS  V  ++     +VV  NLD  +    +  + ++A N      F ++D+ D+A L+ +FA+ + DAV+H A    V  S+     +   N++GT  LLE   A         H        S+  VYG         TE  P    +PY  +K   + + R        W   L  Y  P +  + S   G  P   P  L+P +   A+  +P L V+G      +G  +R+++ V  H
Sbjct:    2 RKILVTGGAGFIGSAVVRHIIRNTQDSVV--NLDKLTYAGNLESLTDIADNP--RYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSEKHEAFRFHHISTDEVYGDLSGTDDLFTETAPYAPSSPYSASKASSDHLVR-------AW---LRTYGLPTIVTNCSNNYG--PYHFPEKLIPLMILNALDGKP-LPVYG------DGMQIRDWLFVEDH 232          
The following BLAST results are available for this feature:
BLAST of DY305572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
UXS1_XENTR4.268e-1126.87UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
RFFG_HAEIN4.268e-1127.38dTDP-glucose 4,6-dehydratase OS=Haemophilus influe... [more]
LPSL_RHIME5.574e-1128.03UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]
GAE1_ARATH5.574e-1131.90UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
RFBB_XANCP7.280e-1128.11dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
RFBB_NEIMB7.280e-1128.74dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
RFBB_NEIMA9.508e-1127.95dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305572 ID=DY305572; Name=DY305572; organism=Citrus sinensis; type=EST; length=1292bp
CCAAGCCCAAGTCTCATCACTTCCTTCGTAATTCCCCCGTTTCTTCAATT
TTTCGTGTACTTTGTTCCTTTTTTTTTTGGTTCTTCTGATTGGTCTCTCC
GTTAGACTCCATGGCTAAGAACATTTTGGTGACCGGTGGCGCCGGTTACA
TTGGAAGCCACACCGTGCTTCAGTTGCTGTTAGGCGGTTACAAAACTGTC
GTCGTTGACAATCTCGATAATGCCTCGGAAATCGCCGTCGCAAAAGTCAA
AGAACTCGCTGGCAATCAAGGCGACAACATGACCTTTCATAAGTTGGATC
TCCGAGACAAAGCAGCGCTGGAAGCATTGTTTGCCAAAACAAAGTTCGAT
GCTGTCATCCATTTTGCTGGACTGAAAGCAGTTGGTGAAAGTGTGCAAAA
ACCATTGCTGTATTTTGACAACAATCTTATTGGAACCATAACTCTCTTGG
AAGTTATGGCAGCACATGGCTGCAAAAATCTGGTCTTTTCATCATCAGCT
ACTGTTTATGGCTGGCCAAAGGTGGTTCCGTGTACAGAAGAGTTCCCGTT
AGAGGCAATGAACCCTTATGGACGTACCAAGCTTTTCATTGAAGAGATTT
GCCGTGATGTCCACCGCTCAGACTCTGAATGGAAGATCATATTGCTGAGA
TATTTCAATCCTGTTGGTGCACATCCAAGTGGCAAAATTGGTGAGGATCC
CCGTGGAATTCCAAACAATCTCATGCCCTTCGTCACTCAAATTGCTGTTG
GCAGGCGTCCAAACCTGACAGTATTTGGAAATGATTACTCAAAAAAAGAA
GGTACTGGGGTCCGTGAATACATTCATGTTAATAAACATAACTAAAGGGC
AAAATTGCTGGCATTGCAAAAACCTGAAGATCCCAAAAAAAAGTTGTGAA
ATGAAAAACATTGGAAAACGGAAAAAAAAAAATCTTTTTTGTAAAATGTT
TACAACTTTTGAAAAACCCTCTGGAAAAAAAAATTCCCCTTTAAAAGTTT
GGGGAAGGAAACACCAAAAACACAAAAATTATATAAGCTATAAAAGAAAA
CGCAAAAGATAAAATTATTAAAAAAAAGAAAAAAGTGGATTCAAAAAATA
TTTAAAAAATACTTAAAAATTAGGCACATACCAAACACTATTTCTCTCAA
TAAGTATATCACATTAAATAAAGCATAATAAAAAATTACATTATATGACC
CCAATAAAATAAATAATAACTACCACAAAAAAAAAAAGATATAAACTACT
GAAAAGCTAATATATATAAATATTTACATAAAATATATTATA
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