DY305567

Overview
NameDY305567
Unique NameDY305567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CHLAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila abortus GN=ispG PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.106e-27
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  471 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKRGNSMDYA 794
            + P      +R+ +F  LQ   +R  KTEY+SCP CGRTLFDL E++  I E+T HL G+ IA+MGCIVNGPGEMADADFG+VG     +DLYV  T VK    M+ A
Sbjct:  481 DLPNIPLSTVREIAFGTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTKRIHERTQHLVGLKIAVMGCIVNGPGEMADADFGFVGSKTGMVDLYVKHTCVKAHIPMEQA 588          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_PORGI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Porphyromonas gingivalis GN=ispG PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.297e-27
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 3
Query:  510 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKRGNSMDYA 794
            +F +LQ  R+R ++TEY+SCPSCGRTL++LQE  A I+  T+HL  + I IMGCIVNGPGEMADAD+GYVG  P +IDLY  K  V+RG   + A
Sbjct:  470 AFGILQATRLRMSRTEYISCPSCGRTLYNLQETVARIKAATAHLKELKIGIMGCIVNGPGEMADADYGYVGAGPGRIDLYKQKICVRRGIPQEQA 564          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_PROMM (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.901e-27
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 3
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EY+SCPSCGRTLF+L+E+  ++R+ TSHL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +++
Sbjct:  296 YSILQSIGLRKTMVEYISCPSCGRTLFNLEEVVQKVRDSTSHLVGLDIAVMGCIVNGPGEMADADYGYVGKGPGVISLYRGRDEIRK 382          

HSP 2 Score: 24.6386 bits (52), Expect = 8.901e-27
Identity = 10/15 (66.67%), Postives = 10/15 (66.67%), Query Frame = 2
Query:  803 LIQLINDPRAWSDPP 847
            LIQLI D   W DPP
Sbjct:  392 LIQLIKDDGRWVDPP 406          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis GN=ispG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.541e-26
Identity = 59/96 (61.46%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  486 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVK 770
            D    R   F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  P  IDLYV    VK
Sbjct:  481 DIKLSRTLGFLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTQHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVK 576          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=ispG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.541e-26
Identity = 59/96 (61.46%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  486 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVK 770
            D    R   F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  P  IDLYV    VK
Sbjct:  481 DIKLSRTLGFLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVK 576          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=ispG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.541e-26
Identity = 59/96 (61.46%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  486 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVK 770
            D    R   F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  P  IDLYV    VK
Sbjct:  481 DIKLSRTLGFLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTQHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVK 576          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CHLT2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ispG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.541e-26
Identity = 59/96 (61.46%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  486 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVK 770
            D    R   F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  P  IDLYV    VK
Sbjct:  481 DIKLSRTLGFLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVK 576          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_BACTN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides thetaiotaomicron GN=ispG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.541e-26
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 3
Query:  507 TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            T+F +LQ  R R +KTEY+SCP CGRTL+DL++  A I+  TSHL G+ I IMGCIVNGPGEMADAD+GYVG    KI LY GK  V++
Sbjct:  501 TAFGILQAGRTRTSKTEYISCPGCGRTLYDLEKTIARIKAATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKGKVCVEK 589          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_BACFN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ispG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.541e-26
Identity = 70/160 (43.75%), Postives = 90/160 (56.25%), Query Frame = 3
Query:  297 RVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGSNXXXXXXXXXXXXXXXEAPGQDFDFLRD-TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            RV   R L   L+   L  PVI    +      +DL I AG++                  G+    + D T+F +LQ  R+R +KTEY+SCP CGRTLF+LQ   A ++E TSHL G+ I IMGCIVNGPGEMADAD+GYVG    KI LY  K  +++
Sbjct:  431 RVGEHRALAHQLTVEGLQNPVIFFQHYAEDT-AEDLQIKAGADMGALIFDGLCDGIYLFNQGKLSHAVIDATAFGILQAGRIRTSKTEYISCPGCGRTLFNLQSTIARVKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKQKECIEK 589          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_BACFR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis GN=ispG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.013e-26
Identity = 69/160 (43.12%), Postives = 90/160 (56.25%), Query Frame = 3
Query:  297 RVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGSNXXXXXXXXXXXXXXXEAPGQDFDFLRD-TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            RV   R L   L+   L  PVI    +      +DL + AG++                  G+    + D T+F +LQ  R+R +KTEY+SCP CGRTLF+LQ   A ++E TSHL G+ I IMGCIVNGPGEMADAD+GYVG    KI LY  K  +++
Sbjct:  431 RVGEHRALAHQLTVEGLQNPVIFFQHYAEDT-AEDLQVKAGADMGALIFDGLCDGIYLFNQGKLSHAVIDATAFGILQAGRIRTSKTEYISCPGCGRTLFNLQSTIARVKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKQKECIEK 589          
The following BLAST results are available for this feature:
BLAST of DY305567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ISPG_CHLAB3.106e-2753.704-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PORGI5.297e-2758.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMM8.901e-2757.474-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTR1.541e-2661.464-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTB1.541e-2661.464-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTA1.541e-2661.464-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLT21.541e-2661.464-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACTN1.541e-2661.804-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFN1.541e-2643.754-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFR2.013e-2643.134-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BH06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305567 ID=DY305567; Name=DY305567; organism=Citrus sinensis; type=EST; length=1250bp
GAGAGCTTCCGTCAGTTGATGATCATGATGCTCGTCTAGCTCTGAAACGG
TTGGTAGATATAAGTATGGGAGTTATAACTCCTTTGTCTGAGCAGCTAAC
AAAGCCACTGCCCCACGCCATGGTTCTGGTAAACCTTCAGGAGTTATCAA
CTGGCGCATACAAGCTTTTGCCAGAAGGAACACGATTGGTTGTATCATTA
CGCGGTGACGAATCCTACGAAGAGCTGGAAATCCTCAAAGATATTGACGC
AACAATGATTCTTCATGATTTACCCTTTAATGAAGATAAAATTGGCAGAG
TACAGGCAGCTAGGAGGCTATTTGAGTATCTATCAGAAAATAATCTAAAC
TTCCCTGTAATTCACCATATTCAGTTTCCGAATGGGATTCACAGGGATGA
CTTGGTCATTGGTGCCGGTTCCAATGTAGGAGCCCTTTTAGTCGATGGAC
TTGGAGATGGTTTGCTGTTAGAAGCCCCAGGACAAGATTTTGATTTTCTG
AGGGACACATCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAAA
GACGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTTC
AAGAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGTT
TCGATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGA
TGCAGACTTTGGGTATGTTGGTGGGGCTCCTGCAAAGATTGACCTGTATG
TCGGGAAGACTGTGGTGAAGCGTGGTAATTCAATGGATTACGCACCCAAT
GCCTGATCCAACTAATAAATGATCCCCGCGCCTGGTCCGACCCTCCCCCT
AAGATTACGATATGGGAATTTTTTTCTTCTGAATAAAAAAAAAGAACTCG
TTCGAGGGAAACCCTCTTACCCCCCCTGTGTTATATAATTTCCAATTGGG
AAAAAAAACTCCCCCTATTTCCAATCAATTAAATTTACGCGTTCATCGAC
GGACCTTTGTTTTCCCAGGCAAAGCGGGATTTTTTCTTCCCTTGAATGGT
AAATCAAGAAGAGAGACCTCCCACTTAATTCAAAAGAATAGCGTTTTGTT
ACTTTTTTTTTTTATTTTTTTACACACAAAAAAGAAAGATTTTTTAAGGT
CTCGAATCAATCCGCAGCCACGTAGCCCGCCTCTCTTCTTTTGTTTTTTT
GGTGTGGTTCGTTGTTCTCTCTCTCTTTTGTTATGAACAGAAAATAAAAT
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