DY305567

Overview
NameDY305567
Unique NameDY305567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_SYNJB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. GN=ispG PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.325e-26
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  471 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            EAP ++       ++ +LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T HL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY GK  VKR
Sbjct:  286 EAPEKEIP----VAYGILQALNLRKTMVEYVACPSCGRTLFNLEEVLQKVRAATQHLVGLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGKEEVKR 382          

HSP 2 Score: 21.557 bits (44), Expect = 3.325e-26
Identity = 9/17 (52.94%), Postives = 9/17 (52.94%), Query Frame = 2
Query:  797 QCLIQLINDPRAWSDPP 847
            Q LI LI     W DPP
Sbjct:  390 QALIDLIKADGRWVDPP 406          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlorobium tepidum GN=ispG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.434e-26
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVK 770
            FN+LQ  R+R +KTE++SCP CGRT F+L++ +A I+++ SHL G+ I IMGCIVNGPGEMADADFGYVG    ++ LYVGK  V+
Sbjct:  635 FNILQAARIRMSKTEFISCPGCGRTYFELEKTTALIKQRVSHLKGLKIGIMGCIVNGPGEMADADFGYVGSGKGRVSLYVGKECVE 720          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_SYNJA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ispG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.328e-26
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  471 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            EAP ++       ++ +LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T HL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY GK  VK+
Sbjct:  286 EAPEKEIP----VAYGILQALNLRKTMVEYVACPSCGRTLFNLEEVLQKVRAATQHLVGLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGKEEVKK 382          

HSP 2 Score: 22.3274 bits (46), Expect = 4.328e-26
Identity = 9/17 (52.94%), Postives = 10/17 (58.82%), Query Frame = 2
Query:  797 QCLIQLINDPRAWSDPP 847
            Q LI+LI     W DPP
Sbjct:  390 QALIELIKADGRWVDPP 406          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_PARD8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ispG PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.485e-26
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 3
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVV 767
            F +LQ  R R +KTEY+SCPSCGRTL+DLQ   A I+E TSHL G+ I IMGCIVNGPGEMADAD+GYVG    +I LY GK  V
Sbjct:  502 FGILQATRTRISKTEYISCPSCGRTLYDLQTTIARIKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGQISLYKGKECV 586          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_BACV8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispG PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.650e-26
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 3
Query:  507 TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKRGNSMDYA 794
            T+F +LQ  R+R +KTEY+SCP CGRTL+DL+   A I+  TSHL G+ I IMGCIVNGPGEMADAD+GYVG    KI LY  K  +++    D A
Sbjct:  502 TAFGILQAGRIRTSKTEYISCPGCGRTLYDLESTIARIKTATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKKKECIEKNIPEDQA 597          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_ANAVT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.704e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +K+
Sbjct:  299 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVRESTKHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGREEIKK 385          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_ANASP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=ispG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.704e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +K+
Sbjct:  299 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVRESTKHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGREEIKK 385          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_THEEB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispG PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.226e-25
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            + +LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G++IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  VK+
Sbjct:  293 YGILQALGLRRTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLNIAVMGCIVNGPGEMADADYGYVGKQPGYISLYRGREEVKK 379          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_NOSP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.226e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +K+
Sbjct:  299 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGREEIKK 385          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_SYNPX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain WH8102) GN=ispG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.796e-25
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 3
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R+ TSHL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +++
Sbjct:  288 YSILQSLGLRKTMVEYVACPSCGRTLFNLEEVLHKVRDATSHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGRDEIRK 374          
The following BLAST results are available for this feature:
BLAST of DY305567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ISPG_SYNJB3.325e-2655.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTE3.434e-2660.474-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNJA4.328e-2654.464-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PARD84.485e-2665.884-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACV87.650e-2657.294-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANAVT1.704e-2558.624-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANASP1.704e-2558.624-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THEEB2.226e-2559.774-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NOSP72.226e-2558.624-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNPX3.796e-2557.474-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BH06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305567 ID=DY305567; Name=DY305567; organism=Citrus sinensis; type=EST; length=1250bp
GAGAGCTTCCGTCAGTTGATGATCATGATGCTCGTCTAGCTCTGAAACGG
TTGGTAGATATAAGTATGGGAGTTATAACTCCTTTGTCTGAGCAGCTAAC
AAAGCCACTGCCCCACGCCATGGTTCTGGTAAACCTTCAGGAGTTATCAA
CTGGCGCATACAAGCTTTTGCCAGAAGGAACACGATTGGTTGTATCATTA
CGCGGTGACGAATCCTACGAAGAGCTGGAAATCCTCAAAGATATTGACGC
AACAATGATTCTTCATGATTTACCCTTTAATGAAGATAAAATTGGCAGAG
TACAGGCAGCTAGGAGGCTATTTGAGTATCTATCAGAAAATAATCTAAAC
TTCCCTGTAATTCACCATATTCAGTTTCCGAATGGGATTCACAGGGATGA
CTTGGTCATTGGTGCCGGTTCCAATGTAGGAGCCCTTTTAGTCGATGGAC
TTGGAGATGGTTTGCTGTTAGAAGCCCCAGGACAAGATTTTGATTTTCTG
AGGGACACATCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAAA
GACGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTTC
AAGAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGTT
TCGATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGA
TGCAGACTTTGGGTATGTTGGTGGGGCTCCTGCAAAGATTGACCTGTATG
TCGGGAAGACTGTGGTGAAGCGTGGTAATTCAATGGATTACGCACCCAAT
GCCTGATCCAACTAATAAATGATCCCCGCGCCTGGTCCGACCCTCCCCCT
AAGATTACGATATGGGAATTTTTTTCTTCTGAATAAAAAAAAAGAACTCG
TTCGAGGGAAACCCTCTTACCCCCCCTGTGTTATATAATTTCCAATTGGG
AAAAAAAACTCCCCCTATTTCCAATCAATTAAATTTACGCGTTCATCGAC
GGACCTTTGTTTTCCCAGGCAAAGCGGGATTTTTTCTTCCCTTGAATGGT
AAATCAAGAAGAGAGACCTCCCACTTAATTCAAAAGAATAGCGTTTTGTT
ACTTTTTTTTTTTATTTTTTTACACACAAAAAAGAAAGATTTTTTAAGGT
CTCGAATCAATCCGCAGCCACGTAGCCCGCCTCTCTTCTTTTGTTTTTTT
GGTGTGGTTCGTTGTTCTCTCTCTCTTTTGTTATGAACAGAAAATAAAAT
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