DY305567

Overview
NameDY305567
Unique NameDY305567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.796e-25
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 3 
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T+HL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +++
Sbjct:  295 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATNHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGREEIRK 381
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_ACAM1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.958e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T+HL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  VK+
Sbjct:  298 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHQVRSATNHLTGLDIAVMGCIVNGPGEMADADYGYVGKQPGYISLYRGREEVKK 384
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_SYNSC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9605) GN=ispG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.476e-25
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  TSHL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +++
Sbjct:  288 YSILQSLGLRKTMVEYVACPSCGRTLFNLEEVLHKVRNATSHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGRDEIRK 374
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP6 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.476e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T+HL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +KR
Sbjct:  294 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVRAATNHLVGLDIAVMGCIVNGPGEMADADYGYVGKTPGTIALYRGRDEIKR 380
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_SYNE7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=ispG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.476e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T+HL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +KR
Sbjct:  294 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVRAATNHLVGLDIAVMGCIVNGPGEMADADYGYVGKTPGTIALYRGRDEIKR 380
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_PROMA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus GN=ispG PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.458e-25
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 3 
Query:  471 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            EAP ++       ++++LQ   +R T  EY+SCPSCGRTLF+L+E+ A++R+ TSHL G+ IA+MGCIVNGPGEMADAD+GYVG     I LY G+  +++
Sbjct:  288 EAPEKEIP----VAYSILQTVGLRKTMVEYISCPSCGRTLFNLEEVVAKVRDATSHLTGLDIAVMGCIVNGPGEMADADYGYVGKGKGIIALYRGREEIRK 384
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS9 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9902) GN=ispG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.023e-24
Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EY++CPSCGRTLF+L+++  ++R  TSHL G+ IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +++
Sbjct:  288 YSILQSLGLRKTMVEYIACPSCGRTLFNLEDVLHKVRNATSHLKGLDIAVMGCIVNGPGEMADADYGYVGKGPGIIALYRGREEIRK 374

HSP 2 Score: 22.3274 bits (46), Expect = 1.023e-24
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 2 
Query:  797 QCLIQLINDPRAWSDP 844
            Q LIQLI +   W DP
Sbjct:  382 QALIQLIQEDGLWVDP 397
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=ispG PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.105e-24
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG     I LY G+  +KR
Sbjct:  297 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKR 383
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_SYNY3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=ispG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.443e-24
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +++LQ   +R T  EYV+CPSCGRTLF+L+++  E+RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG     I LY G+  +KR
Sbjct:  294 YSILQALGLRKTMVEYVACPSCGRTLFNLEDVLHEVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYIALYRGREEIKR 380
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_GLOVI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Gloeobacter violaceus GN=ispG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.443e-24
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 3 
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            + +LQ   +R T  EYV+CPSCGRTLF+L+ +   +RE T HL G++IA+MGCIVNGPGEMADAD+GYVG  P  I LY G+  +K+
Sbjct:  287 YGILQALGLRRTMVEYVACPSCGRTLFNLETVLHRVREATRHLTGLNIAVMGCIVNGPGEMADADYGYVGKTPGTISLYRGREEIKK 373
The following BLAST results are available for this feature:
BLAST of DY305567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ISPG_SYNP23.796e-2557.474-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ACAM14.958e-2558.624-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNSC6.476e-2557.474-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP66.476e-2558.624-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNE76.476e-2558.624-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMA8.458e-2552.484-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNS91.023e-2455.174-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP81.105e-2458.624-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNY31.443e-2458.624-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GLOVI1.443e-2457.474-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BH06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305567 ID=DY305567; Name=DY305567; organism=Citrus sinensis; type=EST; length=1250bp
GAGAGCTTCCGTCAGTTGATGATCATGATGCTCGTCTAGCTCTGAAACGG
TTGGTAGATATAAGTATGGGAGTTATAACTCCTTTGTCTGAGCAGCTAAC
AAAGCCACTGCCCCACGCCATGGTTCTGGTAAACCTTCAGGAGTTATCAA
CTGGCGCATACAAGCTTTTGCCAGAAGGAACACGATTGGTTGTATCATTA
CGCGGTGACGAATCCTACGAAGAGCTGGAAATCCTCAAAGATATTGACGC
AACAATGATTCTTCATGATTTACCCTTTAATGAAGATAAAATTGGCAGAG
TACAGGCAGCTAGGAGGCTATTTGAGTATCTATCAGAAAATAATCTAAAC
TTCCCTGTAATTCACCATATTCAGTTTCCGAATGGGATTCACAGGGATGA
CTTGGTCATTGGTGCCGGTTCCAATGTAGGAGCCCTTTTAGTCGATGGAC
TTGGAGATGGTTTGCTGTTAGAAGCCCCAGGACAAGATTTTGATTTTCTG
AGGGACACATCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAAA
GACGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTTC
AAGAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGTT
TCGATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGA
TGCAGACTTTGGGTATGTTGGTGGGGCTCCTGCAAAGATTGACCTGTATG
TCGGGAAGACTGTGGTGAAGCGTGGTAATTCAATGGATTACGCACCCAAT
GCCTGATCCAACTAATAAATGATCCCCGCGCCTGGTCCGACCCTCCCCCT
AAGATTACGATATGGGAATTTTTTTCTTCTGAATAAAAAAAAAGAACTCG
TTCGAGGGAAACCCTCTTACCCCCCCTGTGTTATATAATTTCCAATTGGG
AAAAAAAACTCCCCCTATTTCCAATCAATTAAATTTACGCGTTCATCGAC
GGACCTTTGTTTTCCCAGGCAAAGCGGGATTTTTTCTTCCCTTGAATGGT
AAATCAAGAAGAGAGACCTCCCACTTAATTCAAAAGAATAGCGTTTTGTT
ACTTTTTTTTTTTATTTTTTTACACACAAAAAAGAAAGATTTTTTAAGGT
CTCGAATCAATCCGCAGCCACGTAGCCCGCCTCTCTTCTTTTGTTTTTTT
GGTGTGGTTCGTTGTTCTCTCTCTCTTTTGTTATGAACAGAAAATAAAAT
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