DY305567

Overview
NameDY305567
Unique NameDY305567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CLOPE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Clostridium perfringens GN=ispG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.951e-11
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 3 
Query:  555 EYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVK 770
            E++SCP+CGRT  DL  I+ E+ E+ S     + +A+MGC+VNGPGE  +AD G  GG    +    G+ + K
Sbjct:  260 EFISCPTCGRTQIDLINIAKEVEERLSSCKKNIKVAVMGCVVNGPGEAREADIGIAGGKGEGLIFRKGEIIKK 332
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_MARMS (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Marinomonas sp. (strain MWYL1) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.078e-11
Identity = 31/90 (34.44%), Postives = 53/90 (58.89%), Query Frame = 3 
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKRGN 779
            +++L+  ++RN    +++CPSC R  FD+ +   E+ E+   +   + +A++GC+VNGPGE  +AD G  GG+P  +    GK   K  N
Sbjct:  252 WDMLRSLKLRNRGINFIACPSCSRQNFDVIKTMNELEERLDDITIPMDVAVIGCVVNGPGEAKEADIGLAGGSPNNLIYQDGKPDSKTKN 341
[Close]
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_COREF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Corynebacterium efficiens GN=ispG PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.078e-11
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:  519 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVK 770
            +LQ   +R  K E VSCPSCGR   D+ +++ E+ E    L   + +A+MGC+VNGPGE  DAD G   G   K  ++V   ++K
Sbjct:  252 ILQSLNLRPRKLEIVSCPSCGRAQVDVYKLAEEVTEGLDGLEVPLRVAVMGCVVNGPGEARDADLGVASG-NGKGQIFVKGEIIK 335
The following BLAST results are available for this feature:
BLAST of DY305567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ISPG_CLOPE6.951e-1142.474-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MARMS9.078e-1134.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_COREF9.078e-1141.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BH06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305567 ID=DY305567; Name=DY305567; organism=Citrus sinensis; type=EST; length=1250bp
GAGAGCTTCCGTCAGTTGATGATCATGATGCTCGTCTAGCTCTGAAACGG
TTGGTAGATATAAGTATGGGAGTTATAACTCCTTTGTCTGAGCAGCTAAC
AAAGCCACTGCCCCACGCCATGGTTCTGGTAAACCTTCAGGAGTTATCAA
CTGGCGCATACAAGCTTTTGCCAGAAGGAACACGATTGGTTGTATCATTA
CGCGGTGACGAATCCTACGAAGAGCTGGAAATCCTCAAAGATATTGACGC
AACAATGATTCTTCATGATTTACCCTTTAATGAAGATAAAATTGGCAGAG
TACAGGCAGCTAGGAGGCTATTTGAGTATCTATCAGAAAATAATCTAAAC
TTCCCTGTAATTCACCATATTCAGTTTCCGAATGGGATTCACAGGGATGA
CTTGGTCATTGGTGCCGGTTCCAATGTAGGAGCCCTTTTAGTCGATGGAC
TTGGAGATGGTTTGCTGTTAGAAGCCCCAGGACAAGATTTTGATTTTCTG
AGGGACACATCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAAA
GACGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTTC
AAGAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGTT
TCGATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGA
TGCAGACTTTGGGTATGTTGGTGGGGCTCCTGCAAAGATTGACCTGTATG
TCGGGAAGACTGTGGTGAAGCGTGGTAATTCAATGGATTACGCACCCAAT
GCCTGATCCAACTAATAAATGATCCCCGCGCCTGGTCCGACCCTCCCCCT
AAGATTACGATATGGGAATTTTTTTCTTCTGAATAAAAAAAAAGAACTCG
TTCGAGGGAAACCCTCTTACCCCCCCTGTGTTATATAATTTCCAATTGGG
AAAAAAAACTCCCCCTATTTCCAATCAATTAAATTTACGCGTTCATCGAC
GGACCTTTGTTTTCCCAGGCAAAGCGGGATTTTTTCTTCCCTTGAATGGT
AAATCAAGAAGAGAGACCTCCCACTTAATTCAAAAGAATAGCGTTTTGTT
ACTTTTTTTTTTTATTTTTTTACACACAAAAAAGAAAGATTTTTTAAGGT
CTCGAATCAATCCGCAGCCACGTAGCCCGCCTCTCTTCTTTTGTTTTTTT
GGTGTGGTTCGTTGTTCTCTCTCTCTTTTGTTATGAACAGAAAATAAAAT
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