DY305566

Overview
NameDY305566
Unique NameDY305566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1246
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX8B_XENLA (Probable glutathione peroxidase 8-B OS=Xenopus laevis GN=gpx8-B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.667e-13
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  526 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPPPQTSE 858
            T +NY  L +L+ ++      +LAFPCNQFG  EPG N++I+  A   +   FP+F K+ + G  A P Y+ L  S         +WNF       +G+V+    P +T+E
Sbjct:   82 TEANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNKEIEAMAKRNYGVTFPVFSKIKILGSEAEPAYRFLVDST----KKEPRWNFWKYLVDPQGQVVKYWRPDETAE 188          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX8A_XENLA (Probable glutathione peroxidase 8-A OS=Xenopus laevis GN=gpx8-A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.183e-12
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  532 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPPPQTSE 858
            +NY  L +L+ ++      +LAFPCNQFG  EPG N++I   A   +   FP+F K+ + G  A P Y+ L  S         +WNF       +G+V+    P +T+E
Sbjct:   84 ANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNQEIGALAKRNYGVTFPMFSKIKILGSEAEPAYRFLVDST----KKEPRWNFWKYLVDPQGQVVKYWRPDETAE 188          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX8_BOVIN (Probable glutathione peroxidase 8 OS=Bos taurus GN=GPX8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.304e-11
Identity = 37/112 (33.04%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  523 LTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPPPQTSE 858
            LT+ NY  L +L+ ++      +LAFPCNQFG  EP  ++++  FA   F   FPIF K+ + G  A P ++ L  S         +WNF       +G+V+    P +  E
Sbjct:   81 LTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKTWRPEEPIE 188          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX8_HUMAN (Probable glutathione peroxidase 8 OS=Homo sapiens GN=GPX8 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 35/112 (31.25%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  523 LTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPPPQTSE 858
            LT+ NY  L +L+ ++      +LAFPCNQFG  EP  +++++ FA   +   FPIF K+ + G    P ++ L  S         +WNF       +G+V+    P +  E
Sbjct:   81 LTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKFWKPEEPIE 188          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX6_HUMAN (Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 1
Query:  532 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI---QEFAC--TRFKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNF 792
            + Y EL+ L ++ KN G+ +LAFPCNQFG QEPG N +I    ++ C  + F   F +F+K DVNG+    ++  LK+S      L G S            I+WNF
Sbjct:   77 AQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNF 183          
The following BLAST results are available for this feature:
BLAST of DY305566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GPX8B_XENLA5.667e-1334.23Probable glutathione peroxidase 8-B OS=Xenopus lae... [more]
GPX8A_XENLA8.183e-1233.94Probable glutathione peroxidase 8-A OS=Xenopus lae... [more]
GPX8_BOVIN5.304e-1133.04Probable glutathione peroxidase 8 OS=Bos taurus GN... [more]
GPX8_HUMAN9.047e-1131.25Probable glutathione peroxidase 8 OS=Homo sapiens ... [more]
GPX6_HUMAN9.047e-1138.32Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BH05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305566 ID=DY305566; Name=DY305566; organism=Citrus sinensis; type=EST; length=1246bp
GCTTAAACGAAATCTCGGAATCGCAACTTCCCTTATTTTGACAAGACATT
TCACTTCGAATTGTAAGCAAACCCTGTTGAGACCTTCGAAAAGTAATCCA
ATTTCTTTGGTTTCAAGGCCTTGTTTCTTCGCTTCTAGATCGGATCATAC
AATGGCAAGCCAATCGAAAACTTCAGTTCACGATTTCAGTGTTAAGGACG
CCAAGGGACAGGATGTTGATCTGAGCATCTACAAGGGAAAGCTTCTTTTG
ATTGTCAATGTTGCATCACAGTGGTATGCCTCAGCTCCTTTCATTTTTTA
CTTTTTTTTTTTTTTAAGTAATGATTCATTGATTATTGTTGATGCTTCCA
TTTAATTAACGCTAATACTCAGAAGCATGCATGCTTTCAATACAAATAAG
CATTTGTAGGAGATGATTTCACCCGGAGACTCTTTAATTCTTGCGCAGTG
CCGGCGACAGTTTTTTTTATTTTTTTTTCCTTTATCCGTTTTATTCATTT
ACCTGATTTTGAACGCAGTGGCTTGACCAATTCAAACTACACTGAGCTGA
GTCAGTTGTACGACAAGTACAAGAATCAAGGCTTGGAGATTCTGGCCTTT
CCTTGTAATCAGTTTGGAGCTCAAGAGCCAGGAGACAATGAACAGATTCA
AGAATTTGCATGCACTCGCTTTAAGGCTGAGTTTCCCATATTTGATAAGG
TTGATGTTAATGGTGATAATGCTGCTCCTTTATACAAGCATCTGAAATCC
AGCAAAGGTGGACTTTTTGGAGACAGCATCAAGTGGAACTTTTCCAGTTC
TTGGTGGATAGGGAAGGGAAAGGTGTTGAACGTTATGCCCCCCCCCCAAA
CCTCTGAACATTGAGGTAGTATAAAGATGTTTGGCTGGTAGTGGCGGTTG
CCCTTTCAATTTTAAGGAAAACTGGACGGTGGGTCTCATTTTATTCCTAA
AAAACTTATTTGGTTATTGGTTGTTACCCCCCTGCCGAAAGGAAAAAAAA
AACTTCCGGGAAACGGCTTAACCGCGGCTCCAACTTGCAGGGATCACCTT
CTTGTCAAAAAACAAAAAAAATCAGGCGGATAAAACCCCTCGGGGGGGGA
AAATTTGGTTTTAACTTTTGCCCCAAATTCGGAAAACCATTAAAGAAAAT
TTTCCCAAAAGCTGCAAAACAAATTTTCAGTGTGAAAAGTGGGCGTGGGT
TTGTTGTGGTTAGTAGGAGGATTGTCCCCCAAAATTTTTTAGTAGA
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