DY305549

Overview
NameDY305549
Unique NameDY305549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1296
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.430e-63
Identity = 110/166 (66.27%), Postives = 136/166 (81.93%), Query Frame = 2
Query:  233 DLYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQEL-NQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQ-NEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +L+ ELW+ACAGPLV+VP++ ERV+YF QGH+EQL+  T+  L  ++I +F++P KILC+VVN+ L AE ETDEV+AQITL P+P Q N PT PDP   + PRP VHSF K+LT SDTSTHGGFSVLR+HA ECLPPLDM+ +TPTQEL+ KDLHG EWRFKHI+R
Sbjct:   14 ELFAELWRACAGPLVEVPQRDERVFYFLQGHLEQLQEPTDPALLAEQIKMFQVPYKILCKVVNVELKAETETDEVFAQITLQPDPDQENLPTLPDPPLPEQPRPVVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPTQELITKDLHGSEWRFKHIYR 179          

HSP 2 Score: 29.6462 bits (65), Expect = 9.430e-63
Identity = 17/40 (42.50%), Postives = 22/40 (55.00%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK*PRGEKR 926
            P+RHLLT GW    V  K+L +G  F  L +     GE+R
Sbjct:  182 PRRHLLTTGWS-TFVTSKKLISGDAFVYLRSE---TGEQR 217          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.899e-60
Identity = 115/182 (63.19%), Postives = 133/182 (73.08%), Query Frame = 2
Query:  230 DDLYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQR-IPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQN----------------EPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            D L+ ELW+ACAGPLV VP  GERV+Y PQGH+EQ+EASTNQ   Q+  PL+ LP KI C+V+N+ L AE +TDEVYAQ+TLLPE  Q+                E   P   PA + RP+VHSF K LTASDTSTHGGFSVLR+HA ECLPPLDM+Q  PTQELVAKDLHG EWRF+HIFR
Sbjct:   27 DGLFVELWRACAGPLVTVPAVGERVFYLPQGHIEQVEASTNQVAEQQGAPLYNLPWKIPCKVMNVELKAEPDTDEVYAQLTLLPEKQQDGNGSGNGNVSKDKVEEEEVVP---PAATERPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQHPPTQELVAKDLHGVEWRFRHIFR 205          

HSP 2 Score: 29.6462 bits (65), Expect = 1.899e-60
Identity = 20/42 (47.62%), Postives = 23/42 (54.76%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGL--ENNK*PRGEKR 926
            P+RHLL  GW  V V  KRL AG  F  L  EN +   G +R
Sbjct:  208 PRRHLLQSGWS-VFVSAKRLVAGDAFIFLRGENGELRVGVRR 248          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 3.828e-52
Identity = 97/163 (59.51%), Postives = 124/163 (76.07%), Query Frame = 2
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +Y +LWK CAGPL D+PK GE+VYYFPQGH+E +EAST +ELN+  P+   PSK+ CRV+ I L  E  +DE YA+ITL+P+ +Q    T +    +  RP V+SF+KVLTASDTS HGGFSV +KHA ECLPPLDM+Q  PTQE++A DLHG +WRF+HI+R
Sbjct:   24 MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQN---QNQFRPLVNSFTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYR 183          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.078e-51
Identity = 97/169 (57.40%), Postives = 121/169 (71.60%), Query Frame = 2
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPE------PSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +Y +LWK CAGPL D+PK GE+VYYFPQGH+E +E ST +ELN+  P+  LPSK+ CRV+ IHL  E  +DE YA+ITL+P+      P+QNE         +  RP V+SF+KVLTASDTS HGGF V +KHA ECLP LDM+Q  P QEL+A DLHG +WRF H +R
Sbjct:   24 VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQNE---------NQFRPLVNSFTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYR 183          

HSP 2 Score: 26.9498 bits (58), Expect = 1.078e-51
Identity = 13/28 (46.43%), Postives = 16/28 (57.14%), Query Frame = 3
Query:  792 NEQVNPKRHLLTPGWKYVLVLPKRLFAG 875
            N +  P+RHLLT GW       K+L AG
Sbjct:  181 NYRGTPQRHLLTTGWN-AFTTSKKLVAG 207          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 5.743e-50
Identity = 95/166 (57.23%), Postives = 122/166 (73.49%), Query Frame = 2
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSP---RPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +Y +LWK CAGPL D+PK GE VYYFPQG++E ++AST +ELN+  P+  LPSK+ CRV+ IHL  E  +DE+YA+ITL+P+      TT    P  S    RP V+SF+KVLTASDTS +GGFSV +KHA ECLPPLDM+Q  P QE++A DLH  +WRF+H +R
Sbjct:   24 MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDEIYAEITLMPD------TTQVVIPTQSENRFRPLVNSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYR 183          

HSP 2 Score: 23.0978 bits (48), Expect = 5.743e-50
Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 3
Query:  792 NEQVNPKRHLLTPGWKYVLVLPKRLFAG 875
            N +  P+RH LT GW    +  K+L  G
Sbjct:  181 NYRGTPQRHSLTTGWN-EFITSKKLVKG 207          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 9.758e-50
Identity = 96/169 (56.80%), Postives = 122/169 (72.19%), Query Frame = 2
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPE------PSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +Y +LWK CAGPL D+PK GE++YYFPQG++E +EAST +ELN+  P+  LPSK+ CRV+ I L  E  +DE YA+ITL+P+      P+QNE         +  RP V+SF+KVLTASDTS  GGF V +KHA ECLPPLDM+Q  PTQEL+A DLHG +WRF H +R
Sbjct:   24 MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNE---------NQFRPLVNSFTKVLTASDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYR 181          

HSP 2 Score: 26.9498 bits (58), Expect = 9.758e-50
Identity = 13/28 (46.43%), Postives = 16/28 (57.14%), Query Frame = 3
Query:  792 NEQVNPKRHLLTPGWKYVLVLPKRLFAG 875
            N +  P+RHLLT GW       K+L AG
Sbjct:  179 NYRGTPQRHLLTTGWN-AFTTSKKLVAG 205          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFW_ARATH (Putative auxin response factor 23 OS=Arabidopsis thaliana GN=ARF23 PE=5 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 1.778e-49
Identity = 96/163 (58.90%), Postives = 119/163 (73.01%), Query Frame = 2
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +Y +LWK CAGPL D+PK GE+VYYFPQGH+E +EAST +ELN+  P   LPSK+ CRV+ IHL  E  +DE Y +ITL+P+ +Q    T +    +  RP V+SF+KVLTASDTS  G FSV  KHA ECLPPLDM+Q  P QEL+A DLHG +WRFKH +R
Sbjct:   24 MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVIAIHLKVENNSDETYVEITLMPDTTQVVIPTEN---ENQFRPIVNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR 183          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 3.671e-49
Identity = 95/169 (56.21%), Postives = 122/169 (72.19%), Query Frame = 2
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPE------PSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +Y +LWK CAGPL D+PK GE+VYYFPQG++E +EAST +ELN+  P+  LPSK+ CRV+ IHL  E  +DE YA+ITL+P+      P+QNE         +  RP V+SF+KVLTASD S +G FSV +KHA ECLPPLDM+Q  P QEL+A DLHG +W F+H +R
Sbjct:   24 MYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAKITLMPDTTQVVIPTQNE---------NQFRPLVNSFTKVLTASDISANGVFSVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNQWSFRHSYR 183          

HSP 2 Score: 23.8682 bits (50), Expect = 3.671e-49
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3
Query:  807 PKRHLLTPGW 836
            P+RHLLT GW
Sbjct:  186 PQRHLLTTGW 195          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.145e-47
Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 2
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQN--EPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            L  ELW ACAGPLV +P  G RV YFPQGH EQ+ ASTN+E+  +IP +  LP +++C++ N+ + A+ ETDEVYAQ+TL P   Q   +P  P    + + +P  + F K LTASDTSTHGGFSV R+ A +  PPLD  Q  P QEL+AKDLHG EW+F+HIFR
Sbjct:   27 LNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAELGSANKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFRHIFR 191          

HSP 2 Score: 35.039 bits (79), Expect = 1.145e-47
Identity = 22/44 (50.00%), Postives = 26/44 (59.09%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGN--FCGLENNK*PRGEKRGN 932
            PKRHLLT GW  V V  KRL AG +  F   +NN+   G +R N
Sbjct:  194 PKRHLLTTGWS-VFVSAKRLVAGDSVLFIWNDNNQLLLGIRRAN 236          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.145e-47
Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 2
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQN--EPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            L  ELW ACAGPLV +P  G RV YFPQGH EQ+ ASTN+E+  +IP +  LP +++C++ N+ + A+ ETDEVYAQ+TL P   Q   +P  P    + + +P  + F K LTASDTSTHGGFSV R+ A +  PPLD  Q  P QEL+AKDLHG EW+F+HIFR
Sbjct:   27 LNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAELGSANKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFRHIFR 191          

HSP 2 Score: 35.039 bits (79), Expect = 1.145e-47
Identity = 22/44 (50.00%), Postives = 26/44 (59.09%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGN--FCGLENNK*PRGEKRGN 932
            PKRHLLT GW  V V  KRL AG +  F   +NN+   G +R N
Sbjct:  194 PKRHLLTTGWS-VFVSAKRLVAGDSVLFIWNDNNQLLLGIRRAN 236          
The following BLAST results are available for this feature:
BLAST of DY305549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ARFA_ORYSJ9.430e-6366.27Auxin response factor 1 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ1.899e-6063.19Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFN_ARATH3.828e-5259.51Putative auxin response factor 14 OS=Arabidopsis t... [more]
ARFL_ARATH1.078e-5157.40Auxin response factor 12 OS=Arabidopsis thaliana G... [more]
ARFU_ARATH5.743e-5057.23Putative auxin response factor 21 OS=Arabidopsis t... [more]
ARFV_ARATH9.758e-5056.80Auxin response factor 22 OS=Arabidopsis thaliana G... [more]
ARFW_ARATH1.778e-4958.90Putative auxin response factor 23 OS=Arabidopsis t... [more]
ARFO_ARATH3.671e-4956.21Putative auxin response factor 15 OS=Arabidopsis t... [more]
ARFQ_ORYSJ1.145e-4754.22Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI1.145e-4754.22Auxin response factor 17 OS=Oryza sativa subsp. in... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BF02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305549 ID=DY305549; Name=DY305549; organism=Citrus sinensis; type=EST; length=1296bp
GGGCGTTTTCGTGGATTCTCCATAAGTTTTTAGAAAGAGAAGGGAGGCGG
TTTTGCTGGAGCTTTGCAACTAGAAGGCGGTTTTGTAACGGCTTTTAGTG
GTTTTCAGTTACAGTTTTGAGATCTCGCGATCGTTACGGATTGAAGAGAG
AGTTCGTGTCAGGACTCAAGTGCTTGTTCAGGAATCGAGAAAGTCTTTGA
GAGTTTATAAAATTCCGAGTAGTAATTCAGACGACTTGTACAGAGAGCTA
TGGAAGGCTTGTGCTGGTCCACTAGTCGACGTGCCGAAGCAAGGAGAGAG
GGTCTATTATTTTCCTCAAGGCCATATGGAACAATTAGAGGCATCTACGA
ATCAAGAACTGAATCAGAGGATTCCGTTGTTTCGTCTTCCGTCGAAGATT
CTATGTCGTGTTGTTAACATTCATCTCATGGCAGAACAAGAAACTGATGA
GGTTTATGCCCAGATTACTTTGCTGCCAGAACCAAGTCAAAATGAGCCTA
CAACTCCTGATCCATGCCCTGCTGATTCTCCAAGACCAAAAGTTCACTCA
TTCTCTAAGGTTTTAACTGCCTCTGATACAAGCACCCATGGAGGGTTTTC
TGTTCTTCGAAAGCATGCTACTGAATGCCTTCCTCCTCTGGACATGAATC
AGTCAACCCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGATATGAG
TGGCGATTTAAGCATATTTTCAGAGATTTTTAGAGTCAAACAAATTCATG
TAGGATCAAACCCCACTCAGTTTCCACCTAATCTATAATTGAATGAACAG
GTCAACCCCAAGAGGCACCTGCTTACACCAGGGTGGAAGTACGTTTTGGT
CCTTCCAAAGAGATTATTTGCTGGGGGAAACTTTTGTGGTCTTGAAAACA
ATAAATAACCCAGGGGCGAAAAACGGGGAAATACTTGGGGGGAATAAGGG
GTCTTTGGCTCATCACAAAAACCACCCTTGTTAAGGCCTTGGNCTTTTCT
NTTCCCAACCTTTGCCCCCTTNNGTTCTTTCCCCCCTTCTTTCTCCTGCT
TTTTTCTCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTT
TTTTTTCTTTCTTCCTTTCTCTTTTTTTTTCTTTTTTTCTCCCTTCCCTC
CTTTCTTTCTTTTCGCCCTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
TTTTTTNTNCTCTCTCCCNCCCCCTCTTTCCCCTCTCCTCCGGTTNCGCT
CGGGCCGCGCGGCGCTGCCCTCTCGTCTTTCTGGGCCGCTCGTGTG
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