EY702562

Overview
NameEY702562
Unique NameEY702562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.180e-15
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  419 LQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKL-ETN*KSRLLPCHK 748
            L V T A      +++ + G  S+  PS+++   G G+N++F G E+APWSK G L   L          GHRVM I+P YDQY+DAWDT  V ++K+ +   + R   C+K
Sbjct:   48 LSVTTSARATPKQQRSVQRG--SRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYK 157          

HSP 2 Score: 31.9574 bits (71), Expect = 1.180e-15
Identity = 16/32 (50.00%), Postives = 18/32 (56.25%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL +  GK   K  GP  G
Sbjct:  157 KRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTG 188          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.182e-15
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  434 MASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDL 703
            +A + AT+ +  RN  R+    S  IVC  G+ I+F  TEV PW K G L   +         MGHRVMTIAP YDQY+D WDT+ ++++
Sbjct:   11 LAKRRATNYETHRNSSRT----SSPIVCSTGMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEV 96          

HSP 2 Score: 32.3426 bits (72), Expect = 1.182e-15
Identity = 17/32 (53.12%), Postives = 19/32 (59.38%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL +  GK  SK  GP  G
Sbjct:  112 KRGVDRVFVDHPMFLEKVWGKTGSKLYGPTTG 143          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.590e-15
Identity = 48/132 (36.36%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  365 KFRCMKHSGLRSLNIIDD-LQVKTMASKLAT--SRQAGRNGFRSQNGPSLMIVCGVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKL-ETN*KSRLLPCHK 748
            +FR     GLR  N  D  L ++T+ +  A   SR+A R   R  +   ++   G G+N++F G E+APWSK G L   L          GHRVM ++P YDQY+DAWDT  + ++K+ +   + R   C+K
Sbjct:   21 RFRRPGFQGLRPRNPADAALGMRTIGASAAPKQSRKAHRGSRRCLS--VVVSATGSGMNLVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVISEIKVADEYERVRFFHCYK 150          

HSP 2 Score: 31.5722 bits (70), Expect = 2.590e-15
Identity = 16/32 (50.00%), Postives = 18/32 (56.25%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL +  GK   K  GP  G
Sbjct:  150 KRGVDRVFIDHPWFLEKVRGKTKEKIYGPDAG 181          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.619e-14
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  389 GLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKLETN*KS-RLLPCHK 748
            GLRSLN    L V+T  +   +S  + ++  +        IVCG+ L  +F G EV PWSK G L   L          GHRVMT++P YDQY+DAWDT+ ++++K+    ++ R   C+K
Sbjct:   44 GLRSLN---KLHVRTARATSGSSDTSEKSLGK--------IVCGMSL--VFVGAEVGPWSKTGGLGDVLGGLPPVLAGNGHRVMTVSPRYDQYKDAWDTNVLVEVKVGDKIETVRFFHCYK 151          

HSP 2 Score: 33.113 bits (74), Expect = 1.619e-14
Identity = 18/32 (56.25%), Postives = 19/32 (59.38%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL R  GK  SK  GP  G
Sbjct:  151 KRGVDRVFVDHPLFLERVWGKTGSKLYGPKTG 182          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.989e-14
Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 2
Query:  365 KFRCMKHSGLRSLNIIDD-LQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVG-LNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLK-LETN*KSRLLPCHK 748
            +FR     GLR  N  D  L ++T+ +  A  +    + F  +    ++   G G +N++F G E+APWSK G L   L          GHRVM I+P YDQY+DAWDT  + ++K ++   + R   C+K
Sbjct:   21 RFRRPGFQGLRPRNPADAALGMRTVGASAAPKQSRKPHRFDRRCLSMVVRATGSGGMNLVFVGAEMAPWSKTGGLGDVLGGLPAAMAANGHRVMVISPRYDQYKDAWDTSVISEIKVVDRYERVRYFHCYK 151          

HSP 2 Score: 31.5722 bits (70), Expect = 5.989e-14
Identity = 16/32 (50.00%), Postives = 18/32 (56.25%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL +  GK   K  GP  G
Sbjct:  151 KRGVDRVFVDHPCFLEKVRGKTKEKIYGPDAG 182          
The following BLAST results are available for this feature:
BLAST of EY702562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SSG1_ORYSA1.180e-1538.39Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU1.182e-1543.33Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_HORVU2.590e-1536.36Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_PEA1.619e-1438.02Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT5.989e-1434.35Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-E03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702562 ID=EY702562; Name=EY702562; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGCAACTGTCTTAACATCTCTCGCAACTTGAAGTGAAGTTG
TAAACCGCGAGAAAATCCTGCGGGTCGTATTAACCACGAATCTCTAGTAA
GTGATTTCCCATGTGCAAGGCACGGCACGGGAACAACTCTACAAAAGAGC
AAAGAGCGAAGTCAGCTGATGTTCACTTCACGTTCATTCATAGACGCCTG
AGCACCAGATTTCATCAGGAAACTAAGAGGGAAACAAATCTTCAGCAGAG
ACTACAAACATAATAATATCAGCTATGGCTACCGCTGTAGCCGCTTCAAG
CTTCGTCTCAAGGAGTTATGGACATGAGGTAGCTTCAGGATTGAATAGTA
AGGCATCACAGATGAAATTTAGGTGTATGAAGCACAGTGGGCTGAGAAGT
TTAAATATCATAGACGATCTCCAAGTGAAAACAATGGCATCGAAACTAGC
CACCAGCAGGCAAGCTGGGAGGAATGGATTTAGAAGCCAGAACGGGCCAT
CCTTAATGATTGTTTGTGGGGTTGGCCTGAATATCCTCTTTGGTGGAACA
GAGGTTGCTCCTTGGAGTAAACTGGGGGACTTGGTGATGTTCTTGGAGGT
CTGCCACCAGCACTGGCCGCCAATGGGGCACCGTGTCATGACNATTGCAC
CCGGATATGACCAGTACCAAGATGCTTGGGATACTGATGGTGTATTGGAC
CTGAAGTTGGAGACAAATTGAAAAAGTCGCCTCCTTCCATGCCACAAAGA
GGAGTTGATCGGGTGTTGGGGGATCATCTTGGGTTCTTGGCAAGGGGGGG
GGGAAAACCCCATTCAAAATCTATGGGCCCTGGGCTGGGGAGGGCTTCCA
GGACACCCACTTTCGCTTAACTTGGTGGGCCAGCGACTCCTTGAACCCCG
AGAATCTG
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