DY305513

Overview
NameDY305513
Unique NameDY305513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1232
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_DESHD (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.474e-21
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  +LIL+E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93

HSP 2 Score: 79.7221 bits (195), Expect = 3.888e-14
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            ++KPL DRV IK    EE T  G+++ + +KEKP  G V+AVGPG + E+G R  L +  G+ V+YSKYAG +++  +G  Y+ L+ +++ AV+
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKM-EKGERIVLDVKVGDRVIYSKYAGTEVK-YDGQEYLILKETDILAVI 93
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_THETN (10 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.925e-21
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   +++  VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQYIDGKRVEPEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 79.337 bits (194), Expect = 5.078e-14
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKPL DRV +KV ++EE T GG++L   +KEKP  G V+AVGPG    +G R    +  G+ V++SKYAG +++  +G  Y+ LR S++ A++
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQY-IDGKRVEPEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.925e-21
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            ++KPL DRVLVK    EEKT GG+F+P TA+ KP  GEVVA G GK     KL  ++VK G  V++SKYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIKLDGVEHLVMREDDILAIIE 95

HSP 2 Score: 90.5077 bits (223), Expect = 2.203e-17
Identity = 41/94 (43.62%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG + E+G    +++  G+TV++SKYAG +++  +G  ++ +R  ++ A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIK-LDGVEHLVMREDDILAII 94
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_DESDG (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.289e-21
Identity = 48/94 (51.06%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEV+AVG GKT    K + ++VK G  V+++KYAGTE++ +G +HL++REDD++ I++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVIAVGPGKTADDGKVIAMTVKTGDVVLFNKYAGTEVKLDGVDHLVMREDDILAIIQ 95

HSP 2 Score: 86.6557 bits (213), Expect = 3.181e-16
Identity = 40/94 (42.55%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G VIAVGPG   ++G    +++  G+ V+++KYAG +++  +G +++ +R  ++ A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVIAVGPGKTADDGKVIAMTVKTGDVVLFNKYAGTEVK-LDGVDHLVMREDDILAII 94
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.630e-20
Identity = 51/95 (53.68%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +++KPLGDRVLVKI   +EKT GGIFLP TA+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++     +++L E D++ I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103

HSP 2 Score: 88.5817 bits (218), Expect = 8.370e-17
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:  586 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +  LKPL DRV +K+A+ +E TAGG+ L + +KEKP +G V+AVGPG  ++EG   P+ +  G+ V+YSKYAG +++      Y+ L   ++ A++
Sbjct:    8 VSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVK-LGSDEYVLLAERDILAIV 102
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.630e-20
Identity = 51/95 (53.68%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +++KPLGDRVLVKI   +EKT GGIFLP TA+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++     +++L E D++ I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103

HSP 2 Score: 88.9669 bits (219), Expect = 6.409e-17
Identity = 41/99 (41.41%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:  577 TDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            T  +  LKPL DRV +K+A+ +E TAGG+ L + +KEKP +G V+AVGPG  ++EG   P+ +  G+ V+YSKYAG +++      Y+ L   ++ A++
Sbjct:    5 TLNVSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVK-LGSDEYVLLAERDILAIV 102
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_LAWIP (10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.128e-20
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94

HSP 2 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 42/95 (44.21%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG +++  +G  ++ +R  ++ AV++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVIT 95
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_LAWIN (10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.128e-20
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94

HSP 2 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 42/95 (44.21%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG +++  +G  ++ +R  ++ AV++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVIT 95
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.780e-20
Identity = 45/96 (46.88%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:  586 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG +++   G +Y+ L   ++ A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVK-LAGEDYVLLSEKDILAIV 102

HSP 2 Score: 94.3597 bits (233), Expect = 1.525e-18
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK T    +  + VK G +V+YSKYAGTE++  G ++++L E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.780e-20
Identity = 45/96 (46.88%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:  586 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG +++   G +Y+ L   ++ A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVK-LAGEDYVLLSEKDILAIV 102

HSP 2 Score: 94.3597 bits (233), Expect = 1.525e-18
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK T    +  + VK G +V+YSKYAGTE++  G ++++L E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102
The following BLAST results are available for this feature:
BLAST of DY305513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 493
Match NameE-valueIdentityDescription
CH10_DESHD1.474e-2153.2610 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_THETN1.925e-2153.2610 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]
CH10_DESVM1.925e-2154.2610 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_DESDG4.289e-2151.0610 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_SYNJB1.630e-2053.6810 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_SYNJA1.630e-2053.6810 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]
CH10_LAWIP2.128e-2051.6110 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH10_LAWIN2.128e-2051.6110 kDa chaperonin OS=Lawsonia intracellularis GN=g... [more]
CH10_THEVL2.780e-2046.8810 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]
CH10_THEEB2.780e-2046.8810 kDa chaperonin OS=Thermosynechococcus elongatus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BA12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305513 ID=DY305513; Name=DY305513; organism=Citrus sinensis; type=EST; length=1232bp
GGTTTTATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAA
ACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCT
CTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCA
ATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTC
TTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCC
GTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCA
ATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGA
GAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTC
AAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACT
AAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTA
TGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGG
AGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAG
CCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAAC
TGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTG
GAATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGG
AAACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGC
AGGGAATGACCTTCAAGGCAGGGAGGGAACCAACTACATTGCTTTAAGAG
CTTCTGAAGTGGAGGCTGTGCTCTCTTAATTGCCGGTGGTTAACTGGACC
AAGGTTTAAAGGTATTAAGGAATGGAATTTATGGGTGAGTTGCCTCCAGG
GAAACGGAATTTTAAAGGTAACTTAATTGGAACAAAAAAAATTGCAGCTT
TGGATCAACGAATTGGCGGGTTGGTTTTTTGGCTAAAAAAAAAAAAAAAG
GGGGGGGCCCGGGACCCCCAATTCCCCCCAAAAGGGGAGCCAAAAAAAAA
TTCCCGGGGGCCGCGTCGTTTTTAAAAAGGCGGGGGCGGGGGGAAAAACC
CCGGGGGGGTTTACCCCAAAATAAAAATACCCCTCGGGGGCAGCCACACC
CCCCCCCCCTTTTCCCCCCACCGCGGGTGGGG
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