DY305513

Overview
NameDY305513
Unique NameDY305513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1232
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_MICLC (10 kDa chaperonin OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.398e-18
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            +KPL DR+ ++  EAE+TTA GL++ + +KEKP  G V+AVGPG + E GNR P+ +A G+ V+YSKY G +++   G  Y+ L A +V AV++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVDVAEGDVVLYSKYGGTEVK-VGGEEYLVLSARDVLAVVT 97          

HSP 2 Score: 79.7221 bits (195), Expect = 3.888e-14
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            SIKPL DR++V+    E+ T  G+ +P TA+ KPQ G+VVAVG G+      ++ + V  G  V+YSKY GTE++  G  +L+L   DV+ ++
Sbjct:    4 SIKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVDVAEGDVVLYSKYGGTEVKVGGEEYLVLSARDVLAVV 96          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_ENTFA (10 kDa chaperonin OS=Enterococcus faecalis GN=groS PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.398e-18
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KPLGDRV++++   EEKT GGI L S A+ KPQ GEV+AVGEG+ +   TK+ + VK G  V++ KY+GTE+++ G  +LI+   D++  +E
Sbjct:    2 LKPLGDRVVIRVAKEEEKTVGGIVLASVAKEKPQTGEVIAVGEGRVLENGTKVPMEVKIGDTVMFEKYSGTEVKYEGVEYLIVSAKDIIATVE 94          

HSP 2 Score: 85.8853 bits (211), Expect = 5.425e-16
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKPL DRV I+VA+ EE T GG++L   +KEKP  G VIAVG G + E G + P+ +  G+TVM+ KY+G +++  EG  Y+ + A ++ A +
Sbjct:    2 LKPLGDRVVIRVAKEEEKTVGGIVLASVAKEKPQTGEVIAVGEGRVLENGTKVPMEVKIGDTVMFEKYSGTEVK-YEGVEYLIVSAKDIIATV 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_DESPS (10 kDa chaperonin OS=Desulfotalea psychrophila GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.398e-18
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            I+PL DR+LVK    EEKT GGI +P +A+ KP  G+VVAVG GK      ++ + VK G  V++SKY GT+++ +G + LI+REDD++GI+E
Sbjct:    3 IRPLNDRLLVKRLAEEEKTAGGIIIPDSAKEKPAEGQVVAVGPGKVSDSGERVALQVKEGDLVLFSKYGGTDVKLDGEDFLIMREDDILGIME 95          

HSP 2 Score: 83.5741 bits (205), Expect = 2.693e-15
Identity = 35/93 (37.63%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            ++PLNDR+ +K    EE TAGG+++ +++KEKP+ G V+AVGPG + + G R  L +  G+ V++SKY G D++  +G +++ +R  ++  ++
Sbjct:    3 IRPLNDRLLVKRLAEEEKTAGGIIIPDSAKEKPAEGQVVAVGPGKVSDSGERVALQVKEGDLVLFSKYGGTDVK-LDGEDFLIMREDDILGIM 94          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_CLOK5 (10 kDa chaperonin OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.398e-18
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            I+PLGDRV++K    EE T  GI LP +A+ KPQ  E+VAVG G  +   ++ + VK G +V++SKYAG E++ +G  + ILR+DD++ I+E
Sbjct:    3 IRPLGDRVVIKKIEAEETTKSGIVLPGSAKEKPQEAEIVAVGPGGVIDGKEIKMEVKVGDRVLFSKYAGNEVKIDGVEYTILRQDDILAIIE 94          

HSP 2 Score: 75.0998 bits (183), Expect = 9.576e-13
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            ++PL DRV IK  EAEETT  G++L  ++KEKP    ++AVGPG +  +G    + +  G+ V++SKYAGN+++  +G  Y  LR  ++ A++
Sbjct:    3 IRPLGDRVVIKKIEAEETTKSGIVLPGSAKEKPQEAEIVAVGPGGV-IDGKEIKMEVKVGDRVLFSKYAGNEVK-IDGVEYTILRQDDILAII 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_CLOK1 (10 kDa chaperonin OS=Clostridium kluyveri (strain NBRC 12016) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.398e-18
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            I+PLGDRV++K    EE T  GI LP +A+ KPQ  E+VAVG G  +   ++ + VK G +V++SKYAG E++ +G  + ILR+DD++ I+E
Sbjct:    3 IRPLGDRVVIKKIEAEETTKSGIVLPGSAKEKPQEAEIVAVGPGGVIDGKEIKMEVKVGDRVLFSKYAGNEVKIDGVEYTILRQDDILAIIE 94          

HSP 2 Score: 75.0998 bits (183), Expect = 9.576e-13
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            ++PL DRV IK  EAEETT  G++L  ++KEKP    ++AVGPG +  +G    + +  G+ V++SKYAGN+++  +G  Y  LR  ++ A++
Sbjct:    3 IRPLGDRVVIKKIEAEETTKSGIVLPGSAKEKPQEAEIVAVGPGGV-IDGKEIKMEVKVGDRVLFSKYAGNEVK-IDGVEYTILRQDDILAII 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_ANOFW (10 kDa chaperonin OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.398e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ G+VVAVG G+ +    ++   V  G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 LKPLGDRIVIELIQTEEKTASGIVLPDTAKEKPQEGKVVAVGSGRVLDNGERVAPEVSVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          

HSP 2 Score: 79.7221 bits (195), Expect = 3.888e-14
Identity = 38/93 (40.86%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKPL DR+ I++ + EE TA G++L + +KEKP  G V+AVG G + + G R    ++ G+ +++SKYAG +++  +G  Y+ LR S++ AV+
Sbjct:    2 LKPLGDRIVIELIQTEEKTASGIVLPDTAKEKPQEGKVVAVGSGRVLDNGERVAPEVSVGDRIIFSKYAGTEVK-YDGKEYLILRESDILAVI 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_CLOCE (10 kDa chaperonin OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.438e-18
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            IKPLGDRV++K+   EE T  GI LP +A+ KPQ  E+VAVG G  V   ++ + VK G +V+ SKY+GTE++F+G  + IL++ D++ I+E
Sbjct:    3 IKPLGDRVVIKMLESEETTKSGIVLPGSAKEKPQVAEIVAVGPGTVVDGKEVKMEVKVGDRVLTSKYSGTEVKFDGQEYTILKQGDILAIVE 94          

HSP 2 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 35/93 (37.63%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +KPL DRV IK+ E+EETT  G++L  ++KEKP +  ++AVGPG +  +G    + +  G+ V+ SKY+G +++  +G  Y  L+  ++ A++
Sbjct:    3 IKPLGDRVVIKMLESEETTKSGIVLPGSAKEKPQVAEIVAVGPGTV-VDGKEVKMEVKVGDRVLTSKYSGTEVK-FDGQEYTILKQGDILAIV 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_SYNS3 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.796e-18
Identity = 42/96 (43.75%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  586 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +  +KPL DRVF+K++E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D++      Y+ L   ++ AV+
Sbjct:    8 VSTVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIK-LGSDEYVLLSEKDILAVV 102          

HSP 2 Score: 88.9669 bits (219), Expect = 6.409e-17
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +++KPLGDRV VKI   EEKT GGI LP TA+ KPQ GEVV VG GK+    ++    V  G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_PROMA (10 kDa chaperonin OS=Prochlorococcus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.796e-18
Identity = 44/97 (45.36%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  586 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V  VGPG  +++G+R+   +  G+ V+YSKYAG D++      Y+ L   ++ AV++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIK-LGSDEYVLLSEKDILAVVN 103          

HSP 2 Score: 86.2705 bits (212), Expect = 4.154e-16
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +++KPLGDRV +K+   EEKT GGI LP TA+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_PELLD (10 kDa chaperonin OS=Pelodictyon luteolum (strain DSM 273) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.796e-18
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            ++KPL DRV+VK    EEKT GG+++P T + KP  GEVVAVG GK     + L + VK G +V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLAMPVKAGDKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94          

HSP 2 Score: 82.8037 bits (203), Expect = 4.593e-15
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            +LKPL DRV +K A AEE T GGL + +  KEKP  G V+AVG G + + G    + +  G+ V+Y KY+G ++   EG +Y+ +R S++ A+L+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLAMPVKAGDKVLYGKYSGTEV-SVEGEDYLIMRESDIFAILA 95          
The following BLAST results are available for this feature:
BLAST of DY305513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 493
Match NameE-valueIdentityDescription
CH10_MICLC3.398e-1846.8110 kDa chaperonin OS=Micrococcus luteus (strain AT... [more]
CH10_ENTFA3.398e-1847.3110 kDa chaperonin OS=Enterococcus faecalis GN=groS... [more]
CH10_DESPS3.398e-1849.4610 kDa chaperonin OS=Desulfotalea psychrophila GN=... [more]
CH10_CLOK53.398e-1846.7410 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH10_CLOK13.398e-1846.7410 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH10_ANOFW3.398e-1846.7410 kDa chaperonin OS=Anoxybacillus flavithermus (s... [more]
CH10_CLOCE4.438e-1847.8310 kDa chaperonin OS=Clostridium cellulolyticum (s... [more]
CH10_SYNS35.796e-1843.7510 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_PROMA5.796e-1845.3610 kDa chaperonin OS=Prochlorococcus marinus GN=gr... [more]
CH10_PELLD5.796e-1849.4610 kDa chaperonin OS=Pelodictyon luteolum (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1BA12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305513 ID=DY305513; Name=DY305513; organism=Citrus sinensis; type=EST; length=1232bp
GGTTTTATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAA
ACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCT
CTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCA
ATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTC
TTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCC
GTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCA
ATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGA
GAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTC
AAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACT
AAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTA
TGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGG
AGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAG
CCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAAC
TGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTG
GAATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGG
AAACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGC
AGGGAATGACCTTCAAGGCAGGGAGGGAACCAACTACATTGCTTTAAGAG
CTTCTGAAGTGGAGGCTGTGCTCTCTTAATTGCCGGTGGTTAACTGGACC
AAGGTTTAAAGGTATTAAGGAATGGAATTTATGGGTGAGTTGCCTCCAGG
GAAACGGAATTTTAAAGGTAACTTAATTGGAACAAAAAAAATTGCAGCTT
TGGATCAACGAATTGGCGGGTTGGTTTTTTGGCTAAAAAAAAAAAAAAAG
GGGGGGGCCCGGGACCCCCAATTCCCCCCAAAAGGGGAGCCAAAAAAAAA
TTCCCGGGGGCCGCGTCGTTTTTAAAAAGGCGGGGGCGGGGGGAAAAACC
CCGGGGGGGTTTACCCCAAAATAAAAATACCCCTCGGGGGCAGCCACACC
CCCCCCCCCTTTTCCCCCCACCGCGGGTGGGG
back to top