DY305513

Overview
NameDY305513
Unique NameDY305513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1232
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_ALKOO (10 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.570e-18
Identity = 43/93 (46.24%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +IKPLGDRV++K    EE T  GI LP +A+ +PQ  EV+AVG G  +   ++ + VK G +VI+SKYAGTE++F+G  + IL++ D++ ++E
Sbjct:    2 NIKPLGDRVVIKRVEAEETTKSGIVLPGSAKEQPQLAEVMAVGPGGVIEGKEVVMEVKVGDKVIFSKYAGTEVKFDGVEYTILKQSDILAVVE 94

HSP 2 Score: 75.485 bits (184), Expect = 7.332e-13
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            ++KPL DRV IK  EAEETT  G++L  ++KE+P +  V+AVGPG +  EG    + +  G+ V++SKYAG +++  +G  Y  L+ S++ AV+
Sbjct:    2 NIKPLGDRVVIKRVEAEETTKSGIVLPGSAKEQPQLAEVMAVGPGGV-IEGKEVVMEVKVGDKVIFSKYAGTEVK-FDGVEYTILKQSDILAVV 93
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_THET8 (10 kDa chaperonin OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=groS PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            T IKPLGDRV+VK    E KT GGI LP TA+ KPQ G+V+AVG G+ +    ++ + VK G  V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct:    7 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101

HSP 2 Score: 78.9518 bits (193), Expect = 6.632e-14
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +KPL DRV +K  E E  T GG++L + +KEKP  G VIAVG G + E G R PL +  G+ V+++KY G +++  +G  Y+ L   ++ AVL
Sbjct:    9 IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIE-IDGEEYVILSERDLLAVL 100
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_THET2 (10 kDa chaperonin OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=groS PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            T IKPLGDRV+VK    E KT GGI LP TA+ KPQ G+V+AVG G+ +    ++ + VK G  V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct:    7 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101

HSP 2 Score: 78.9518 bits (193), Expect = 6.632e-14
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +KPL DRV +K  E E  T GG++L + +KEKP  G VIAVG G + E G R PL +  G+ V+++KY G +++  +G  Y+ L   ++ AVL
Sbjct:    9 IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIE-IDGEEYVILSERDLLAVL 100
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_MYCUA (10 kDa chaperonin OS=Mycobacterium ulcerans (strain Agy99) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G +++   G  Y+ L A +V AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YGGEEYLILSARDVLAVVS 99

HSP 2 Score: 82.0333 bits (201), Expect = 7.834e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +IKPL D++LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++ G  +LIL   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYGGEEYLILSARDVLAVV 98
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_MYCMM (10 kDa chaperonin OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G +++   G  Y+ L A +V AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YGGEEYLILSARDVLAVVS 99

HSP 2 Score: 82.0333 bits (201), Expect = 7.834e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +IKPL D++LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++ G  +LIL   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYGGEEYLILSARDVLAVV 98
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_COPPD (10 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            IKPLGDRVL+K    EEKT  GI +P TA+ KPQ G+V+AVG G+T+   T++ + V+ G  V++SKYAGTE++ +G  +LI+ E D++ ++
Sbjct:    3 IKPLGDRVLLKPMEEEEKTKSGIVIPDTAKEKPQKGKVLAVGTGRTLDNGTRVPLEVQVGDIVVFSKYAGTEVKVDGEEYLIVSERDILAVV 94

HSP 2 Score: 76.2554 bits (186), Expect = 4.299e-13
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            ++KPL DRV +K  E EE T  G+++ + +KEKP  G V+AVG G   + G R PL +  G+ V++SKYAG +++  +G  Y+ +   ++ AV+
Sbjct:    2 EIKPLGDRVLLKPMEEEEKTKSGIVIPDTAKEKPQKGKVLAVGTGRTLDNGTRVPLEVQVGDIVVFSKYAGTEVK-VDGEEYLIVSERDILAVV 94
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_CHLTE (10 kDa chaperonin OS=Chlorobium tepidum GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            ++KPL DRV+VK    EEKT GG+++P T + KP  GEVVAVG GK     + + + VK G +V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGPGKVSDAGQVVAMQVKAGDKVLYGKYSGTEVHVEGEDYLIMRESDIFAIL 94

HSP 2 Score: 84.7297 bits (208), Expect = 1.209e-15
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +LKPL DRV +K A AEE T GGL + +  KEKP  G V+AVGPG + + G    + +  G+ V+Y KY+G ++   EG +Y+ +R S++ A+L
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGPGKVSDAGQVVAMQVKAGDKVLYGKYSGTEVH-VEGEDYLIMRESDIFAIL 94
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_BACP2 (10 kDa chaperonin OS=Bacillus pumilus (strain SAFR-032) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + V  G ++I+SKYAGTE+++ G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVIIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVNTGDRIIFSKYAGTEVKYEGKEYLILRESDILAVI 93

HSP 2 Score: 85.1149 bits (209), Expect = 9.254e-16
Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKPL DRV I++ E+EE TA G++L +++KEKP  G ++A G G + E G R  L +  G+ +++SKYAG +++  EG  Y+ LR S++ AV+
Sbjct:    2 LKPLGDRVIIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVNTGDRIIFSKYAGTEVK-YEGKEYLILRESDILAVI 93
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_ALKMQ (10 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 43/93 (46.24%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +IKPLGD+V++K    E+KT  GI LP +A+ +PQ  EVVAVG G  V   ++ + +K G +VI+SKYAGTE++ +G  + ILR++D++ ++E
Sbjct:    2 NIKPLGDKVVIKKVEAEDKTKSGIVLPGSAKEQPQMAEVVAVGPGGVVEGKEIIMELKVGDKVIFSKYAGTEVKLDGEEYTILRQNDILAVVE 94

HSP 2 Score: 70.8626 bits (172), Expect = 1.806e-11
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            ++KPL D+V IK  EAE+ T  G++L  ++KE+P +  V+AVGPG +  EG    + +  G+ V++SKYAG +++  +G  Y  LR +++ AV+
Sbjct:    2 NIKPLGDKVVIKKVEAEDKTKSGIVLPGSAKEQPQMAEVVAVGPGGV-VEGKEIIMELKVGDKVIFSKYAGTEVK-LDGEEYTILRQNDILAVV 93
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_RHOSR (10 kDa chaperonin OS=Rhodococcus sp. (strain RHA1) GN=groS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.291e-17
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVG G ++E+GNR P+ +  G+TV+YSKY G +++   G  Y+ L A +V AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIK-YAGQEYLILSARDVLAVVS 98

HSP 2 Score: 84.3445 bits (207), Expect = 1.578e-15
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +IKPL D++LV+    E  T  G+ +P TA+ KPQ G VVAVGEG+   +  ++ + VK G  VIYSKY GTE+++ G  +LIL   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYAGQEYLILSARDVLAVV 97
The following BLAST results are available for this feature:
BLAST of DY305513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 493
Match NameE-valueIdentityDescription
CH10_ALKOO7.570e-1846.2410 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH10_THET89.887e-1848.4210 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH10_THET29.887e-1848.4210 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH10_MYCUA9.887e-1846.8810 kDa chaperonin OS=Mycobacterium ulcerans (strai... [more]
CH10_MYCMM9.887e-1846.8810 kDa chaperonin OS=Mycobacterium marinum (strain... [more]
CH10_COPPD9.887e-1848.9110 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH10_CHLTE9.887e-1848.3910 kDa chaperonin OS=Chlorobium tepidum GN=groS PE... [more]
CH10_BACP29.887e-1844.5710 kDa chaperonin OS=Bacillus pumilus (strain SAFR... [more]
CH10_ALKMQ9.887e-1846.2410 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH10_RHOSR1.291e-1745.2610 kDa chaperonin OS=Rhodococcus sp. (strain RHA1)... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BA12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305513 ID=DY305513; Name=DY305513; organism=Citrus sinensis; type=EST; length=1232bp
GGTTTTATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAA
ACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCT
CTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCA
ATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTC
TTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCC
GTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCA
ATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGA
GAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTC
AAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACT
AAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTA
TGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGG
AGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAG
CCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAAC
TGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTG
GAATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGG
AAACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGC
AGGGAATGACCTTCAAGGCAGGGAGGGAACCAACTACATTGCTTTAAGAG
CTTCTGAAGTGGAGGCTGTGCTCTCTTAATTGCCGGTGGTTAACTGGACC
AAGGTTTAAAGGTATTAAGGAATGGAATTTATGGGTGAGTTGCCTCCAGG
GAAACGGAATTTTAAAGGTAACTTAATTGGAACAAAAAAAATTGCAGCTT
TGGATCAACGAATTGGCGGGTTGGTTTTTTGGCTAAAAAAAAAAAAAAAG
GGGGGGGCCCGGGACCCCCAATTCCCCCCAAAAGGGGAGCCAAAAAAAAA
TTCCCGGGGGCCGCGTCGTTTTTAAAAAGGCGGGGGCGGGGGGAAAAACC
CCGGGGGGGTTTACCCCAAAATAAAAATACCCCTCGGGGGCAGCCACACC
CCCCCCCCCTTTTCCCCCCACCGCGGGTGGGG
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