DY305513 | Citrus Genome Database

Overview


Name	DY305513
Unique Name	DY305513
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1232

Libraries


Library Name	Type
SLH	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_STAAE (10 kDa chaperonin OS=Staphylococcus aureus (strain Newman) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1

Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

HSP 2 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 1

Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKP+ +RV I+  E E+TT  G++LT+++KEK + G+++AVG G L  +G R    +  G+ V++ +YAG +++ R+   Y+ L   ++ AV+
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_STAAC (10 kDa chaperonin OS=Staphylococcus aureus (strain COL) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1

Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

HSP 2 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 1

Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKP+ +RV I+  E E+TT  G++LT+++KEK + G+++AVG G L  +G R    +  G+ V++ +YAG +++ R+   Y+ L   ++ AV+
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_STAAB (10 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1

Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

HSP 2 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 1

Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKP+ +RV I+  E E+TT  G++LT+++KEK + G+++AVG G L  +G R    +  G+ V++ +YAG +++ R+   Y+ L   ++ AV+
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_STAA9 (10 kDa chaperonin OS=Staphylococcus aureus (strain JH9) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1

Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

HSP 2 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 1

Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKP+ +RV I+  E E+TT  G++LT+++KEK + G+++AVG G L  +G R    +  G+ V++ +YAG +++ R+   Y+ L   ++ AV+
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_STAA8 (10 kDa chaperonin OS=Staphylococcus aureus (strain NCTC 8325) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1

Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

HSP 2 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 1

Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKP+ +RV I+  E E+TT  G++LT+++KEK + G+++AVG G L  +G R    +  G+ V++ +YAG +++ R+   Y+ L   ++ AV+
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_STAA3 (10 kDa chaperonin OS=Staphylococcus aureus (strain USA300) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1

Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

HSP 2 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 1

Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKP+ +RV I+  E E+TT  G++LT+++KEK + G+++AVG G L  +G R    +  G+ V++ +YAG +++ R+   Y+ L   ++ AV+
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_STAA2 (10 kDa chaperonin OS=Staphylococcus aureus (strain JH1) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1

Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

HSP 2 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 1

Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKP+ +RV I+  E E+TT  G++LT+++KEK + G+++AVG G L  +G R    +  G+ V++ +YAG +++ R+   Y+ L   ++ AV+
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_STAA1 (10 kDa chaperonin OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1

Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94

HSP 2 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 1

Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKP+ +RV I+  E E+TT  G++LT+++KEK + G+++AVG G L  +G R    +  G+ V++ +YAG +++ R+   Y+ L   ++ AV+
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVK-RDNETYLVLNEEDILAVI 93

BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_RHOFD (10 kDa chaperonin OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 1

Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLD-ISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            ++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK   K ++  ++VK G +V++ KY+G  ++  G   L+++EDD+  ++E
Sbjct:    3 LRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGEISPMAVKVGDRVLFGKYSGQTVKVAGDELLVMKEDDLFAVVE 95

HSP 2 Score: 69.3218 bits (168), Expect = 5.255e-11
Identity = 32/93 (34.41%), Postives = 60/93 (64.52%), Query Frame = 1

Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            L+PL+DRV +K  E E  TA G+++ +++ EKP  G V+AVGPG  +++G   P+++  G+ V++ KY+G  ++   G   + ++  ++ AV+
Sbjct:    3 LRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGEISPMAVKVGDRVLFGKYSGQTVK-VAGDELLVMKEDDLFAVV 94

BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_CHLCV (10 kDa chaperonin OS=Chlamydophila caviae GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 36/93 (38.71%), Postives = 57/93 (61.29%), Query Frame = 1

Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +KPL DR+ +K  E + T  GG++L + +K+K     V+ +G G  D++GN  P  +  G+TV+  KYAG +L   +G  Y+ ++ SEV AVL
Sbjct:   10 IKPLGDRILVKREEEDSTARGGIILPDTAKKKQDRAEVLVLGTGKRDKDGNVLPFEVTVGDTVLIDKYAGQELT-VDGEEYVIVQESEVMAVL 101

HSP 2 Score: 69.707 bits (169), Expect = 4.023e-11
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 1

Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            IKPLGDR+LVK +  +    GGI LP TA+ K    EV+ +G GK       L   V  G  V+  KYAG EL  +G  ++I++E +V+ +L+
Sbjct:   10 IKPLGDRILVKREEEDSTARGGIILPDTAKKKQDRAEVLVLGTGKRDKDGNVLPFEVTVGDTVLIDKYAGQELTVDGEEYVIVQESEVMAVLK 102

The following BLAST results are available for this feature:

BLAST of DY305513 vs. ExPASy Swiss-Prot

BLAST of DY305513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 493


Match Name	E-value	Identity	Description
CH10_STAAE	1.634e-12	36.56	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAAC	1.634e-12	36.56	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAAB	1.634e-12	36.56	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAA9	1.634e-12	36.56	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAA8	1.634e-12	36.56	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAA3	1.634e-12	36.56	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAA2	1.634e-12	36.56	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_STAA1	1.634e-12	36.56	10 kDa chaperonin OS=Staphylococcus aureus (strain...	[more]
CH10_RHOFD	1.634e-12	40.86	10 kDa chaperonin OS=Rhodoferax ferrireducens (str...	[more]
CH10_CHLCV	1.634e-12	38.71	10 kDa chaperonin OS=Chlamydophila caviae GN=groS ...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAM1BA12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY305513 ID=DY305513; Name=DY305513; organism=Citrus sinensis; type=EST; length=1232bp
GGTTTTATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAA
ACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCT
CTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCA
ATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTC
TTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCC
GTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCA
ATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGA
GAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTC
AAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACT
AAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTA
TGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGG
AGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAG
CCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAAC
TGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTG
GAATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGG
AAACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGC
AGGGAATGACCTTCAAGGCAGGGAGGGAACCAACTACATTGCTTTAAGAG
CTTCTGAAGTGGAGGCTGTGCTCTCTTAATTGCCGGTGGTTAACTGGACC
AAGGTTTAAAGGTATTAAGGAATGGAATTTATGGGTGAGTTGCCTCCAGG
GAAACGGAATTTTAAAGGTAACTTAATTGGAACAAAAAAAATTGCAGCTT
TGGATCAACGAATTGGCGGGTTGGTTTTTTGGCTAAAAAAAAAAAAAAAG
GGGGGGGCCCGGGACCCCCAATTCCCCCCAAAAGGGGAGCCAAAAAAAAA
TTCCCGGGGGCCGCGTCGTTTTTAAAAAGGCGGGGGCGGGGGGAAAAACC
CCGGGGGGGTTTACCCCAAAATAAAAATACCCCTCGGGGGCAGCCACACC
CCCCCCCCCTTTTCCCCCCACCGCGGGTGGGG