DY305513

Overview
NameDY305513
Unique NameDY305513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1232
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_LEPCP (10 kDa chaperonin OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.023e-11
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            L+PL+DRV +K  E E  TA G+++ + + EKP  G V+AVGPG  +++G+   L++A G+ V++ KY+G  ++  +G   + +R  ++ AV+
Sbjct:    3 LRPLHDRVIVKRLEQETKTASGIVIPDNAAEKPDQGEVLAVGPGKRNDKGDFVALNVAVGDRVLFGKYSGQTVK-VDGDELLVMREEDLFAVV 94          

HSP 2 Score: 69.3218 bits (168), Expect = 5.255e-11
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            ++PL DRV+VK    E KT  GI +P  A  KP  GEV+AVG GK   K   + ++V  G +V++ KY+G  ++ +G   L++RE+D+  ++
Sbjct:    3 LRPLHDRVIVKRLEQETKTASGIVIPDNAAEKPDQGEVLAVGPGKRNDKGDFVALNVAVGDRVLFGKYSGQTVKVDGDELLVMREEDLFAVV 94          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_CHLPN (10 kDa chaperonin OS=Chlamydia pneumoniae GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.023e-11
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            IKPLGDR+LVK +  E    GGI LP TA+ K    EV+ +G GK T   T L   V+ G  ++  KYAG E+  +   ++IL+  +++ +L+
Sbjct:   10 IKPLGDRILVKREEEEATARGGIILPDTAKKKQDRAEVLVLGTGKRTDDGTLLPFEVQVGDIILMDKYAGQEITIDDEEYVILQSSEIMAVLK 102          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_STAS1 (10 kDa chaperonin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=groS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.255e-11
Identity = 33/93 (35.48%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKPL +RV I+ +E E+TT  G++LT+++KEK + G +IAVG G + ++G+R    +  G+ V++ +YAG +++ R    Y+ +   ++ A++
Sbjct:    2 LKPLGNRVIIQKSEQEQTTKSGIVLTDSAKEKSNEGTIIAVGAGRILKDGSRVAPEVNEGDKVVFQQYAGTEVK-RGDETYLIVNEEDILAII 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_PSEST (10 kDa chaperonin OS=Pseudomonas stutzeri GN=groS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.255e-11
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 576
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_PSEPW (10 kDa chaperonin OS=Pseudomonas putida (strain W619) GN=groS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.255e-11
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 576
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEVVAVGTGRILDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          

HSP 2 Score: 68.9366 bits (167), Expect = 6.863e-11
Identity = 33/93 (35.48%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            L+PL+DRV I+ +E E  TAGG++L  ++ EKP+ G V+AVG G + + G  + L++  G+ V++  Y+G++    +G + + +  +E+ AV+
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEVVAVGTGRILDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVV 95          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_COLMA (10 kDa chaperonin OS=Colwellia maris GN=groS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.255e-11
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELE-FNGANHLILREDDVVGILE 576
            SI+PL DRV+VK K  E K++GGI L  +A  K    EV+AVG G+ +   ++  + VK G QVI+S+  G + E  +G   LIL E D++ I+E
Sbjct:    2 SIRPLHDRVIVKRKDAESKSEGGIVLMGSATEKSTRAEVIAVGNGRILENGEVRPLDVKVGDQVIFSEGYGVKTEKIDGEEVLILSESDILAIVE 96          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_STAHJ (10 kDa chaperonin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.863e-11
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KPLG+RV+++ K  E+ T  GI L  +A+ K   G VVAVG G+ +    K+   VK G +V++ +YAG+E++     +LIL  +D++ I+E
Sbjct:    2 LKPLGNRVIIERKEQEQTTKSGIVLTDSAKEKSNEGIVVAVGTGRVLDNGEKVAPEVKEGDRVVFQEYAGSEVKRGDKTYLILNVEDLLAIIE 94          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_PSEU2 (10 kDa chaperonin OS=Pseudomonas syringae pv. syringae (strain B728a) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.863e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 576
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_PSESM (10 kDa chaperonin OS=Pseudomonas syringae pv. tomato GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.863e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 576
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_PSE14 (10 kDa chaperonin OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.863e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 576
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
The following BLAST results are available for this feature:
BLAST of DY305513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 493
Match NameE-valueIdentityDescription
CH10_LEPCP4.023e-1136.5610 kDa chaperonin OS=Leptothrix cholodnii (strain ... [more]
CH10_CHLPN4.023e-1139.7810 kDa chaperonin OS=Chlamydia pneumoniae GN=groS ... [more]
CH10_STAS15.255e-1135.4810 kDa chaperonin OS=Staphylococcus saprophyticus ... [more]
CH10_PSEST5.255e-1136.1710 kDa chaperonin OS=Pseudomonas stutzeri GN=groS ... [more]
CH10_PSEPW5.255e-1136.1710 kDa chaperonin OS=Pseudomonas putida (strain W6... [more]
CH10_COLMA5.255e-1143.1610 kDa chaperonin OS=Colwellia maris GN=groS PE=3 ... [more]
CH10_STAHJ6.863e-1138.7110 kDa chaperonin OS=Staphylococcus haemolyticus (... [more]
CH10_PSEU26.863e-1135.1110 kDa chaperonin OS=Pseudomonas syringae pv. syri... [more]
CH10_PSESM6.863e-1135.1110 kDa chaperonin OS=Pseudomonas syringae pv. toma... [more]
CH10_PSE146.863e-1135.1110 kDa chaperonin OS=Pseudomonas syringae pv. phas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BA12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305513 ID=DY305513; Name=DY305513; organism=Citrus sinensis; type=EST; length=1232bp
GGTTTTATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAA
ACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCT
CTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCA
ATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTC
TTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCC
GTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCA
ATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGA
GAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTC
AAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACT
AAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTA
TGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGG
AGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAG
CCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAAC
TGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTG
GAATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGG
AAACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGC
AGGGAATGACCTTCAAGGCAGGGAGGGAACCAACTACATTGCTTTAAGAG
CTTCTGAAGTGGAGGCTGTGCTCTCTTAATTGCCGGTGGTTAACTGGACC
AAGGTTTAAAGGTATTAAGGAATGGAATTTATGGGTGAGTTGCCTCCAGG
GAAACGGAATTTTAAAGGTAACTTAATTGGAACAAAAAAAATTGCAGCTT
TGGATCAACGAATTGGCGGGTTGGTTTTTTGGCTAAAAAAAAAAAAAAAG
GGGGGGGCCCGGGACCCCCAATTCCCCCCAAAAGGGGAGCCAAAAAAAAA
TTCCCGGGGGCCGCGTCGTTTTTAAAAAGGCGGGGGCGGGGGGAAAAACC
CCGGGGGGGTTTACCCCAAAATAAAAATACCCCTCGGGGGCAGCCACACC
CCCCCCCCCTTTTCCCCCCACCGCGGGTGGGG
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