DY305513

Overview
NameDY305513
Unique NameDY305513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1232
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_NEOSM (10 kDa chaperonin OS=Neorickettsia sennetsu (strain Miyayama) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.863e-11
Identity = 31/92 (33.70%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAV 870
            LK L+D+V I+  E E+  AGG+ + +++K+KP++G+V+AVG G  +  G  +P+ +  G+ V+Y K+AG++++  +G  Y+ ++ +++ A+
Sbjct:    5 LKMLHDQVLIRPHE-EKDGAGGIYIPDSAKKKPTMGLVVAVGAGAKNSNGTFQPVCVKEGDIVLYRKWAGSEVE-HDGVEYVVMKETDIIAI 94
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_EHRSE (10 kDa chaperonin OS=Ehrlichia sennetsu GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.863e-11
Identity = 31/92 (33.70%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAV 870
            LK L+D+V I+  E E+  AGG+ + +++K+KP++G+V+AVG G  +  G  +P+ +  G+ V+Y K+AG++++  +G  Y+ ++ +++ A+
Sbjct:    5 LKMLHDQVLIRPHE-EKDGAGGIYIPDSAKKKPTMGLVVAVGAGAKNSNGTFQPVCVKEGDIVLYRKWAGSEVE-HDGVEYVVMKETDIIAI 94
[Close]
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_PSEU5 (10 kDa chaperonin OS=Pseudomonas stutzeri (strain A1501) GN=groS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.963e-11
Identity = 34/94 (36.17%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDI-SVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 576
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++   +VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRAPAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVIE 96
The following BLAST results are available for this feature:
BLAST of DY305513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 493
Match NameE-valueIdentityDescription
CH10_NEOSM6.863e-1133.7010 kDa chaperonin OS=Neorickettsia sennetsu (strai... [more]
CH10_EHRSE6.863e-1133.7010 kDa chaperonin OS=Ehrlichia sennetsu GN=groS PE... [more]
CH10_PSEU58.963e-1136.1710 kDa chaperonin OS=Pseudomonas stutzeri (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BA12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305513 ID=DY305513; Name=DY305513; organism=Citrus sinensis; type=EST; length=1232bp
GGTTTTATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAA
ACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCT
CTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCA
ATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTC
TTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCC
GTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCA
ATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGA
GAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTC
AAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACT
AAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTA
TGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGG
AGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAG
CCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAAC
TGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTG
GAATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGG
AAACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGC
AGGGAATGACCTTCAAGGCAGGGAGGGAACCAACTACATTGCTTTAAGAG
CTTCTGAAGTGGAGGCTGTGCTCTCTTAATTGCCGGTGGTTAACTGGACC
AAGGTTTAAAGGTATTAAGGAATGGAATTTATGGGTGAGTTGCCTCCAGG
GAAACGGAATTTTAAAGGTAACTTAATTGGAACAAAAAAAATTGCAGCTT
TGGATCAACGAATTGGCGGGTTGGTTTTTTGGCTAAAAAAAAAAAAAAAG
GGGGGGGCCCGGGACCCCCAATTCCCCCCAAAAGGGGAGCCAAAAAAAAA
TTCCCGGGGGCCGCGTCGTTTTTAAAAAGGCGGGGGCGGGGGGAAAAACC
CCGGGGGGGTTTACCCCAAAATAAAAATACCCCTCGGGGGCAGCCACACC
CCCCCCCCCTTTTCCCCCCACCGCGGGTGGGG
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