DY305513

Overview
NameDY305513
Unique NameDY305513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1232
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_BACCN (10 kDa chaperonin OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.943e-19
Identity = 43/92 (46.74%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G ++I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDRIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          

HSP 2 Score: 91.6633 bits (226), Expect = 9.887e-18
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG +++  EGT+Y+ LR S++ AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDRIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_ANASP (10 kDa chaperonin OS=Anabaena sp. (strain PCC 7120) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.943e-19
Identity = 44/94 (46.81%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +++KPLGDRV VK+   EEKT GG++LP TA+ KPQ GEVVA+G GK     ++ ++ VK G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGLYLPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDKVLYSKYAGTDVKLGTEEYVLLSEKDILAVV 102          

HSP 2 Score: 90.1225 bits (222), Expect = 2.877e-17
Identity = 44/97 (45.36%), Postives = 68/97 (70.10%), Query Frame = 1
Query:  586 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQ-GREGTNYIALRASEVEAVL 873
            +  +KPL DRVF+KV+ +EE TAGGL L + +KEKP +G V+A+G G  +++G+R+ L +  G+ V+YSKYAG D++ G E   Y+ L   ++ AV+
Sbjct:    8 VSTVKPLGDRVFVKVSASEEKTAGGLYLPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDKVLYSKYAGTDVKLGTE--EYVLLSEKDILAVV 102          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.168e-18
Identity = 45/94 (47.87%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +++KPLG+RV VK+   EEKT GGI LP +A+ KPQ GEVV+ G GK     T+ ++ VK G +V+YSKYAGT+++  G  +++L E D++ I+
Sbjct:    9 STVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIKLGGDEYVLLAEKDILAIV 102          

HSP 2 Score: 94.3597 bits (233), Expect = 1.525e-18
Identity = 42/100 (42.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:  577 TDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            T  +  +KPL +RVF+KV+E+EE TAGG+LL +++KEKP +G V++ GPG  +++G R  + +  G+ V+YSKYAG D++   G  Y+ L   ++ A+++
Sbjct:    5 TLSVSTVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIK-LGGDEYVLLAEKDILAIVN 103          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_BEUC1 (10 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.168e-18
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +KPL DR+ +K  EAE+TTA GL++ + +KEKP  G V+A+GPG +D+ GNR P+ +A G+ V+YSKY G +++   G  Y+ L A +V AV+
Sbjct:    5 IKPLEDRIVVKTLEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRVDDNGNRVPVDVAVGDVVIYSKYGGTEVK-YAGQEYLILSARDVLAVV 96          

HSP 2 Score: 82.8037 bits (203), Expect = 4.593e-15
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            SIKPL DR++VK    E+ T  G+ +P TA+ KPQ GEV+A+G G+      ++ + V  G  VIYSKY GTE+++ G  +LIL   DV+ +++
Sbjct:    4 SIKPLEDRIVVKTLEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRVDDNGNRVPVDVAVGDVVIYSKYGGTEVKYAGQEYLILSARDVLAVVQ 97          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_BACSK (10 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.168e-18
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +KPLGDR++++    EEKT  GI LP +A+ KPQ G+VVAVG G+ T    K+ + VK G  +I+SKYAGTE+++ G  +LILRE DV+ I+
Sbjct:    2 LKPLGDRIIIEQIQSEEKTASGIVLPDSAKEKPQEGKVVAVGTGRVTDNGEKVALEVKEGDSIIFSKYAGTEVKYEGTEYLILRESDVLAII 93          

HSP 2 Score: 86.2705 bits (212), Expect = 4.154e-16
Identity = 40/93 (43.01%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKPL DR+ I+  ++EE TA G++L +++KEKP  G V+AVG G + + G +  L +  G+++++SKYAG +++  EGT Y+ LR S+V A++
Sbjct:    2 LKPLGDRIIIEQIQSEEKTASGIVLPDSAKEKPQEGKVVAVGTGRVTDNGEKVALEVKEGDSIIFSKYAGTEVK-YEGTEYLILRESDVLAII 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_SYNPX (10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.525e-18
Identity = 43/97 (44.33%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  586 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D++   G  ++ L   ++ A+++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIK-LGGDEFVLLTEKDILAIVN 103          

HSP 2 Score: 89.3521 bits (220), Expect = 4.907e-17
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +++KPLGDRV +K+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++  G   ++L E D++ I+
Sbjct:    9 STVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGGDEFVLLTEKDILAIV 102          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_PROM9 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9312) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.525e-18
Identity = 44/96 (45.83%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  586 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D++   G  Y+ L   ++ AV+
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102          

HSP 2 Score: 87.8113 bits (216), Expect = 1.428e-16
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  +++L E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_PROA2 (10 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.525e-18
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            ++KPL DRV+VK    EEKT GG+++P T + KPQ GE+VAVG GK     + L++ V  G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEIVAVGTGKVAENGQVLEMQVNIGQKVLYGKYSGTEVTVEGEDYLIMRESDIFAILD 95          

HSP 2 Score: 80.4925 bits (197), Expect = 2.279e-14
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +LKPL DRV +K A AEE T GGL + +  KEKP  G ++AVG G + E G    + +  G  V+Y KY+G ++   EG +Y+ +R S++ A+L
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEIVAVGTGKVAENGQVLEMQVNIGQKVLYGKYSGTEVT-VEGEDYLIMRESDIFAIL 94          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_NOSP7 (10 kDa chaperonin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.525e-18
Identity = 47/97 (48.45%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  586 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQ-GREGTNYIALRASEVEAVL 873
            +  +KPL+DRVF+KV  +EE TAGGL L + +KEKP +G V+A+GPG  +E+G+R+ L I  G+ V+YSKYAG D++ G E   Y+ L   ++ AV+
Sbjct:    8 VSTVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTE--EYVLLSEKDILAVV 102          

HSP 2 Score: 93.2041 bits (230), Expect = 3.398e-18
Identity = 42/94 (44.68%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  295 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +++KPL DRV VK+   EEKT GG++LP TA+ KPQ GEVVA+G GK     ++ ++ +K G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAVV 102          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_NOCSJ (10 kDa chaperonin OS=Nocardioides sp. (strain BAA-499 / JS614) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.525e-18
Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            ++KPL DR+ +K  +AE+TTA GL++ + +KEKP  G V+A+GPG +D+ GNR PL +  G+ V+YSKY G +++   G  Y+ L A +V AV+S
Sbjct:    4 NIKPLEDRIVVKPLDAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRIDDNGNRVPLDVTVGDKVIYSKYGGTEVK-YAGEEYLILSARDVLAVVS 97          

HSP 2 Score: 80.8777 bits (198), Expect = 1.745e-14
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK---TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +IKPL DR++VK    E+ T  G+ +P TA+ KPQ GEV+A+G G+      +  LD++V  G +VIYSKY GTE+++ G  +LIL   DV+ ++
Sbjct:    4 NIKPLEDRIVVKPLDAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRIDDNGNRVPLDVTV--GDKVIYSKYGGTEVKYAGEEYLILSARDVLAVV 96          
The following BLAST results are available for this feature:
BLAST of DY305513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 493
Match NameE-valueIdentityDescription
CH10_BACCN8.943e-1946.7410 kDa chaperonin OS=Bacillus cereus subsp. cytoto... [more]
CH10_ANASP8.943e-1946.8110 kDa chaperonin OS=Anabaena sp. (strain PCC 7120... [more]
CH10_TRIEI1.168e-1847.8710 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]
CH10_BEUC11.168e-1847.3110 kDa chaperonin OS=Beutenbergia cavernae (strain... [more]
CH10_BACSK1.168e-1851.0910 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
CH10_SYNPX1.525e-1844.3310 kDa chaperonin OS=Synechococcus sp. (strain WH8... [more]
CH10_PROM91.525e-1845.8310 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROA21.525e-1847.8710 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH10_NOSP71.525e-1848.4510 kDa chaperonin OS=Nostoc punctiforme (strain AT... [more]
CH10_NOCSJ1.525e-1846.3210 kDa chaperonin OS=Nocardioides sp. (strain BAA-... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BA12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305513 ID=DY305513; Name=DY305513; organism=Citrus sinensis; type=EST; length=1232bp
GGTTTTATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAA
ACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCT
CTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCA
ATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTC
TTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCC
GTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCA
ATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGA
GAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTC
AAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACT
AAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTA
TGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGG
AGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAG
CCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAAC
TGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTG
GAATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGG
AAACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGC
AGGGAATGACCTTCAAGGCAGGGAGGGAACCAACTACATTGCTTTAAGAG
CTTCTGAAGTGGAGGCTGTGCTCTCTTAATTGCCGGTGGTTAACTGGACC
AAGGTTTAAAGGTATTAAGGAATGGAATTTATGGGTGAGTTGCCTCCAGG
GAAACGGAATTTTAAAGGTAACTTAATTGGAACAAAAAAAATTGCAGCTT
TGGATCAACGAATTGGCGGGTTGGTTTTTTGGCTAAAAAAAAAAAAAAAG
GGGGGGGCCCGGGACCCCCAATTCCCCCCAAAAGGGGAGCCAAAAAAAAA
TTCCCGGGGGCCGCGTCGTTTTTAAAAAGGCGGGGGCGGGGGGAAAAACC
CCGGGGGGGTTTACCCCAAAATAAAAATACCCCTCGGGGGCAGCCACACC
CCCCCCCCCTTTTCCCCCCACCGCGGGTGGGG
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