DY305510
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3) HSP 1 Score: 243.817 bits (621), Expect = 2.812e-69 Identity = 124/246 (50.41%), Postives = 160/246 (65.04%), Query Frame = 3 Query: 72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHL 809 RPL+TV + + S + LP V + IRPD+V F+ + +N RQ +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGG MFAP K++RRWHR +N+ QKRY P+L+ ARGH I+ V E+PLVVSD ES KT A+ L++ +AD EK +S+ R GKGK+RNR++ + GP+V+Y + A+ +AFRNIPG PGGHL Sbjct: 4 RPLVTVYDEKYEAT---QSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIY-GQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHL 245 HSP 2 Score: 40.4318 bits (93), Expect = 2.812e-69 Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKLDEFNG-NFDKGSKRRKG*VLPRAKMVNAELARII 951 GR I+WT+SAF+KLD G S+ +KG +P M N++ +RII Sbjct: 246 GRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRII 293
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 5.115e-43 Identity = 93/199 (46.73%), Postives = 116/199 (58.29%), Query Frame = 3 Query: 237 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV--------VSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHL 809 KAG Q SA SWGTGRAV+RIPR+ G G+ R GQGAFGNM R G MF+P K +R+W RK +R+ P+LV ARGH I VP++P V S S ++KT A+ +LK+I AY+D K S+ IR G+GKMR R+ RKGPLVVY + + VKAFRNIPG PG H+ Sbjct: 3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSVSFLQPQFHSSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHM 201 HSP 2 Score: 27.7202 bits (60), Expect = 5.115e-43 Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKLD 855 GRFI+W +SAF+KL+ Sbjct: 202 GRFIIWPESAFKKLN 216
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METKA (50S ribosomal protein L4P OS=Methanopyrus kandleri GN=rpl4p PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 8.138e-31 Identity = 86/242 (35.54%), Postives = 117/242 (48.35%), Query Frame = 3 Query: 87 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGG-RMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSA-EGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 V +LEG+ TV LP + +R D++ N RQPY +AG +TSAESWG G V+ +PRV G AG+ A GG + APT + W +++N ++R P V RGH I+ VP +P+VV D +S+ K + K +G +AD E+AK ++ IR GKGK R RRY+ K L+V EG KL RN PG PG H Sbjct: 5 VFNLEGEEV----DTVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTP-EKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEGIKL--GARNHPGVDVVEAMHLGVEHLAPGAH 239
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.388e-30 Identity = 78/242 (32.23%), Postives = 121/242 (50.00%), Query Frame = 3 Query: 81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 I V SLEG+ A + LP++ RPD++ + QP+ AG +TSA+S+G GR V+ +PR+ G + AF GGR P + + +H +IN ++R LV ARGH+IE VP++PLVV D +++T+ +V +++G D +A++ + IR GKGKMR R+Y + +GPL+V + + + RN PG PG H Sbjct: 3 IKVYSLEGE----AIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKIRAGKGKMRGRKYRTPRGPLIVV-GDDKGITRGARNHPGVDVVRVENLNAELLAPGTH 234
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.805e-29 Identity = 78/214 (36.45%), Postives = 104/214 (48.60%), Query Frame = 3 Query: 162 IRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGG 803 IRPD++ + + QP V AG + S ES+G G ++RIPR G R G F RGGR P K+ ++ H +IN +K+ S V ARGH +E VP +P+VV AE + + A K+ + +G + D E+A + IR GKGKMR RRY K LVV S A L+ A RN PG PGG Sbjct: 52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAAVRNFPGVDVVAVNNLNILVLAPGG 262 HSP 2 Score: 20.7866 bits (42), Expect = 1.805e-29 Identity = 8/14 (57.14%), Postives = 9/14 (64.29%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKL 852 GR +WT A EKL Sbjct: 265 GRLTLWTAPAVEKL 278
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.994e-29 Identity = 76/234 (32.48%), Postives = 110/234 (47.01%), Query Frame = 3 Query: 105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 D+ + LPDV RPD++ N QPY AG +TSA WG+GR S +PR+ + + A RGGR P K K+N ++RY P+LV RGH E E+P+V ++ E ++KT ++ L+ IG Y D +AK + IR G+GK+R R+Y +K L+V + E A ++KA RN+ G PG H Sbjct: 8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLVN-----SSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGESAPILKAARNLSGVDVATVDSLNAELLAPGTH 233 HSP 2 Score: 25.0238 bits (53), Expect = 3.994e-29 Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKLD 855 GR +WT+SA EKL+ Sbjct: 235 GRLTIWTESAVEKLE 249
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 5.201e-29 Identity = 75/221 (33.94%), Postives = 115/221 (52.04%), Query Frame = 3 Query: 87 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749 V++L G++A + + LP++ + RPD++ + QP+ + AG +TSAESWG+GR +++PR+ G + A GGR P K+ + ++IN +KR P LV RGH E ++PLV D E V +T + L +G YAD E+AK S+ +R G+G MR RRY RK L+V G + ++A RN+ G Sbjct: 5 VRTLTGEIAHE----IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNGS-----RVARVPQATGGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFEG--DLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSRKVRAGRGTMRGRRYKQRKSVLIV---TGGEPLRAARNLAG 211 HSP 2 Score: 26.9498 bits (58), Expect = 5.201e-29 Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKLDEFN 864 GR +WT+SA +L+EF+ Sbjct: 232 GRLTIWTESAIRRLEEFS 249
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 8.813e-29 Identity = 75/241 (31.12%), Postives = 118/241 (48.96%), Query Frame = 3 Query: 87 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAE-GAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 V S+EG++ + + LP + RPD++ + QP+ +AG +TSA+ WG+GR +R+PR+ G + AF M GGR PT+ + H KIN+ ++R+ LV RGH++ + ++P++V D SV+ T ++ + +G Y D +AK+ + IR G+GK R R+Y KGPL+V + G KL RN G PG H Sbjct: 5 VYSMEGEVKEE----IELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEGKRIRAGRGKTRGRKYKKVKGPLLVVGEDNGIKL--GARNHAGVDVVTVENLNAELLAPGTH 234 HSP 2 Score: 21.9422 bits (45), Expect = 8.813e-29 Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKL 852 GR ++TKSA EKL Sbjct: 236 GRLTIFTKSAVEKL 249
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_ARCFU (50S ribosomal protein L4P OS=Archaeoglobus fulgidus GN=rpl4p PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.945e-28 Identity = 79/240 (32.92%), Postives = 114/240 (47.50%), Query Frame = 3 Query: 87 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 V +L+G++ + + LP+V RPDI+ + + RQPY + +G S E+WG G +R+PR G + GGR P K R+W KIN + R LV R H E E+P VVS+ ESV++T +V + IG YAD E+AK+ + R G+GKMR RRY+ +K L+V + +VKA +N+PG PG H Sbjct: 5 VLNLKGEVTEE----IELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLGR-----RAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEG--ELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKDDG-VVKAAKNLPGVDAVVVKDLNVELLAPGCH 232 HSP 2 Score: 25.409 bits (54), Expect = 1.945e-28 Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKLDEF 861 GR VWTKSA E L E+ Sbjct: 234 GRLTVWTKSAVEYLGEW 250
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULAC (50S ribosomal protein L4P OS=Sulfolobus acidocaldarius GN=rpl4p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 4.937e-28 Identity = 76/242 (31.40%), Postives = 120/242 (49.59%), Query Frame = 3 Query: 81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 ++V L+G+ + + LP +R D++ V + S QP AG +TSA S+G ++R+PRV G +G+ A GGR+ P +R ++N+ +K+ P+ V ARGH+ T +P+++ D E++ K + +LK IG D ++ K+S+G+R GKGKMR RRY KGPL+V S + +V++ NIPG PGGH Sbjct: 10 VSVLDLKGNQLEE----IELPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRVKG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKARGHRF-TSNNVPIILVDDFENISKAKEIMDILKSIGVVDDIKRVKESKGVRAGKGKMRGRRYQIAKGPLIVVSNHKSPVVESASNIPGVNVVSANLVSVIHLAPGGH 241 The following BLAST results are available for this feature:
BLAST of DY305510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305510 ID=DY305510; Name=DY305510; organism=Citrus sinensis; type=EST; length=1277bpback to top |