DY305510

Overview
NameDY305510
Unique NameDY305510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1277
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.436e-27
Identity = 80/235 (34.04%), Postives = 109/235 (46.38%), Query Frame = 3
Query:  105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            D++ ++   + LP+V     RPD++     +   N  QPY     AG QTSA SWG+GR V+++PR+  G    R  Q        GGR   P K       KIN  +KR              LV ARGHK     E+P V  D+ E + K    +  L+  G Y D  +AK+ + IR GKGK R R+Y +RK  L+V + E + L KA  N+PG               PG H
Sbjct:    8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNRKSVLIV-TGEESLLSKAANNLPGVDVATVTALNAELLAPGTH 233          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.090e-27
Identity = 80/223 (35.87%), Postives = 111/223 (49.78%), Query Frame = 3
Query:   81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749
            + V +L+G    D    + LP V +A  RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD E+AKD   IR G+GK+R R+YI  K  LVV   +  + + A RN+ G
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVVV-GDACEAITASRNLAG 214          

HSP 2 Score: 23.483 bits (49), Expect = 2.090e-27
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDEFNGNF 873
            GR  +WT++A EK+   NG F
Sbjct:  235 GRLTLWTENAIEKI---NGRF 252          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METST (50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.719e-27
Identity = 73/242 (30.17%), Postives = 117/242 (48.35%), Query Frame = 3
Query:   81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            I V SL+GD+  +    + LP++ +   RPD++     ++     QP+     AG +T+AES+G+GR  + +PRV G     + + AF     GGR   P ++   +H KIN  ++               LV  RGH++  + ++P V+ D  E+V+ T    ++ K +G   D  +AK  + I+ GKGK+R R+Y + KGPLVV   +    + A RN  G               PG H
Sbjct:    4 INVYSLKGDITEE----IELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVVVGNDRGISLGA-RNHAGVDVVEVNNINAELLAPGTH 235          

HSP 2 Score: 23.0978 bits (48), Expect = 2.719e-27
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDE 858
            GR  ++TKSA EKL +
Sbjct:  237 GRLTIYTKSAIEKLGD 252          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.216e-26
Identity = 76/234 (32.48%), Postives = 110/234 (47.01%), Query Frame = 3
Query:  105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            D+   A   V LP V  A  RPD++         N  QPY     +G +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  ES+E+T   ++ L+  G Y D  +AK  + IR G+GK+R R+Y  +K  L+V + E   ++KA RN+ G               PG H
Sbjct:    8 DLTGKAVGEVELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLVN-----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDLESLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGENTPILKAARNLSGVDVVTVDSLNAELLAPGTH 233          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.074e-26
Identity = 75/234 (32.05%), Postives = 111/234 (47.44%), Query Frame = 3
Query:  105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            D+       + LP V  A  RPD++         N  QPY  S  AG +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  E++E+T   ++ L+  G Y D  +AK  + IR G+GK+R R+Y  +K  L+V + E + ++KA RN+ G               PG H
Sbjct:    8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLKN-----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGENSPILKAARNLSGVDVVTVDSLNAELLAPGTH 233          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULSO (50S ribosomal protein L4P OS=Sulfolobus solfataricus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.293e-25
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 3
Query:  132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            V LP +    +R D++  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   + NV +KR             + V ARGH  +     P+VV+D   +++ TS   + LK+IG Y D E+ K+   IR GKGKMR R+Y    GPL++     + ++KA RN+ G               PG H
Sbjct:   23 VELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAH 242          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_THEAC (50S ribosomal protein L4P OS=Thermoplasma acidophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.995e-25
Identity = 72/241 (29.88%), Postives = 114/241 (47.30%), Query Frame = 3
Query:   81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGG 803
            + + S+ G+M  +    + LP+V    +R DI+      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A G     G+     +  +  + KIN  +++               V  RGH+ +   ++P+VV D  E + KT  A+ +LK +G Y D E++++ + IR G+GKMR RRY   K  L+V  A  +  +KAFR++PG               PGG
Sbjct:    5 VPIYSVSGEMKGE----IDLPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIV--ARNSSAMKAFRSLPGVDIASPNSLSIRKLAPGG 234          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_HALWD (50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.995e-25
Identity = 74/222 (33.33%), Postives = 110/222 (49.55%), Query Frame = 3
Query:   84 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749
            T+ +L GD A     T+ LP V +   RPD++         N +QPY     AG +T AES+G+GR ++ +PR   G   R  Q         GR   P K  +   + +N  +++            PS V  RGH+ E   E+PLVVSD  E + KT   + VL+ +G +AD  ++ +++ IR G+GK R R+Y   K  L + S E +   KA RN+ G
Sbjct:    4 TIHNLNGDKA----DTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPR-ENGQARRVPQAV------SGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSDEFEELIKTQEVVDVLESLGVHADIVRSDENKSIRAGRGKTRGRKYRRPKSILFITSDEPS---KAARNLAG 211          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_THEGJ (50S ribosomal protein L4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.912e-25
Identity = 78/242 (32.23%), Postives = 111/242 (45.87%), Query Frame = 3
Query:   81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            + V +LEG+   +    + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+           AF    RGGR   P K+ +     IN  ++R            P LV ARGH ++ VP  PLVV D  + V KT+   ++ K++G + D E+AK +  IR GKGKMR RRY   KGPL+V  A+   +V+  RN PG               PG H
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTPPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANPDLVRARGHVVDNVPAFPLVVVDDLQKVFKTAQTREIFKKLGIWDDIERAKRNTKIRAGKGKMRGRRYKKAKGPLIVV-AKNEGIVQGARNHPGVDVVTVDNLGVELLAPGTH 235          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.903e-25
Identity = 75/223 (33.63%), Postives = 106/223 (47.53%), Query Frame = 3
Query:   81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749
            + V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   E + KT   L V K +   AD EKAKD   I+ G+ K+R R+Y   +  LVV   +  + + A RN+ G
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAADVEKAKDGIKIKAGRAKLRGRKYKKPRSVLVVV-GDACEAIAASRNLAG 214          

HSP 2 Score: 23.483 bits (49), Expect = 6.903e-25
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDEFNGNF 873
            GR  +WT++A EK+   NG F
Sbjct:  235 GRLTLWTENAIEKI---NGRF 252          
The following BLAST results are available for this feature:
BLAST of DY305510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_METBU1.436e-2734.0450S ribosomal protein L4P OS=Methanococcoides burt... [more]
RL4_METMP2.090e-2735.8750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METST2.719e-2730.1750S ribosomal protein L4P OS=Methanosphaera stadtm... [more]
RL4_METAC1.216e-2632.4850S ribosomal protein L4P OS=Methanosarcina acetiv... [more]
RL4_METMA2.074e-2632.0550S ribosomal protein L4P OS=Methanosarcina mazei ... [more]
RL4_SULSO2.293e-2531.5650S ribosomal protein L4P OS=Sulfolobus solfataric... [more]
RL4_THEAC2.995e-2529.8850S ribosomal protein L4P OS=Thermoplasma acidophi... [more]
RL4_HALWD2.995e-2533.3350S ribosomal protein L4P OS=Haloquadratum walsbyi... [more]
RL4_THEGJ3.912e-2532.2350S ribosomal protein L4P OS=Thermococcus gammatol... [more]
RL4_METM56.903e-2533.6350S ribosomal protein L4P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BA08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305510 ID=DY305510; Name=DY305510; organism=Citrus sinensis; type=EST; length=1277bp
GAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCCCAAAAAAAAACAAA
AAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCCAGTCTTTGGA
AGGTGACATGGCCACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCA
TGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTGTCCACTCTAACATC
TCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCA
GACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCC
GTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAAC
ATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATG
GCACCGTAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCA
TTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATC
GAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGT
GGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCAGATCGGTGCATATG
CTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGT
AAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCCCGCTTGTTGTGTA
CTCAGCCGAGGGTGCTAAGCTTGTCAAGGCTTTTAGGAACATTCCCGGTG
TTGAGGTTGTGAATGTTGAGAGATTGAACTTGTTGAAGCTGGGGCCGGGT
GGCCATCTTTGGGCGGTTTATTGTTTGGACTAAATCGGCTTTTGAGAAGC
TTGATGAATTTAATGGTAATTTTGATAAGGGTTCCAAGAGAAGAAAGGGT
TAAGTGCTGCCTCGTGCTAAAATGGTCAACGCTGAATTGGCTAGGATTAT
AACTCGGAAGAAGTGCAGTCTGGTGTAAGGGCAAATAAAAACTGAGGTAA
AGAGGCCTCCAATGAAAAATAAACCCCCTCAAGAACTTGAAATAACAAAG
TTTTCGGTTTGAACCCATTGGCAAAAAAGGGCCCCGAAAAAAGTTCTCTT
TTGGCGGAAGGGCAAAAAGGGTTTAAAGGCTAAAAAAAGGAAAAAACCCT
CACAAAAAAAAAAGGAAAACCCCCCTCCAAAAAAGGAGAGAGGAGCCTTC
CGGGGAAATAATAGGGGCCCTCCCGGGGGCGAGAGGCAGGGGGGGATAAA
CACAAAAAACGAAAAATATATTTCCCC
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