DY305510
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.436e-27 Identity = 80/235 (34.04%), Postives = 109/235 (46.38%), Query Frame = 3 Query: 105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 D++ ++ + LP+V RPD++ + N QPY AG QTSA SWG+GR V+++PR+ G R Q GGR P K KIN +KR LV ARGHK E+P V D+ E + K + L+ G Y D +AK+ + IR GKGK R R+Y +RK L+V + E + L KA N+PG PG H Sbjct: 8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNRKSVLIV-TGEESLLSKAANNLPGVDVATVTALNAELLAPGTH 233
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.090e-27 Identity = 80/223 (35.87%), Postives = 111/223 (49.78%), Query Frame = 3 Query: 81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749 + V +L+G D + LP V +A RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ ES+ KT L+V K + AD E+AKD IR G+GK+R R+YI K LVV + + + A RN+ G Sbjct: 3 VKVYNLDGSEKGD----IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVVV-GDACEAITASRNLAG 214 HSP 2 Score: 23.483 bits (49), Expect = 2.090e-27 Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKLDEFNGNF 873 GR +WT++A EK+ NG F Sbjct: 235 GRLTLWTENAIEKI---NGRF 252
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METST (50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl4p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.719e-27 Identity = 73/242 (30.17%), Postives = 117/242 (48.35%), Query Frame = 3 Query: 81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 I V SL+GD+ + + LP++ + RPD++ ++ QP+ AG +T+AES+G+GR + +PRV G + + AF GGR P ++ +H KIN ++ LV RGH++ + ++P V+ D E+V+ T ++ K +G D +AK + I+ GKGK+R R+Y + KGPLVV + + A RN G PG H Sbjct: 4 INVYSLKGDITEE----IELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVVVGNDRGISLGA-RNHAGVDVVEVNNINAELLAPGTH 235 HSP 2 Score: 23.0978 bits (48), Expect = 2.719e-27 Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKLDE 858 GR ++TKSA EKL + Sbjct: 237 GRLTIYTKSAIEKLGD 252
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.216e-26 Identity = 76/234 (32.48%), Postives = 110/234 (47.01%), Query Frame = 3 Query: 105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 D+ A V LP V A RPD++ N QPY +G +TSA WG+GR VS +PR+ + + A +GGR P K K+N ++RY P+LV RGH E E+P+V + ES+E+T ++ L+ G Y D +AK + IR G+GK+R R+Y +K L+V + E ++KA RN+ G PG H Sbjct: 8 DLTGKAVGEVELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLVN-----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDLESLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGENTPILKAARNLSGVDVVTVDSLNAELLAPGTH 233
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.074e-26 Identity = 75/234 (32.05%), Postives = 111/234 (47.44%), Query Frame = 3 Query: 105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 D+ + LP V A RPD++ N QPY S AG +TSA WG+GR VS +PR+ + + A +GGR P K K+N ++RY P+LV RGH E E+P+V + E++E+T ++ L+ G Y D +AK + IR G+GK+R R+Y +K L+V + E + ++KA RN+ G PG H Sbjct: 8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLKN-----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGENSPILKAARNLSGVDVVTVDSLNAELLAPGTH 233
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULSO (50S ribosomal protein L4P OS=Sulfolobus solfataricus GN=rpl4p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.293e-25 Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 3 Query: 132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 V LP + +R D++ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ + NV +KR + V ARGH + P+VV+D +++ TS + LK+IG Y D E+ K+ IR GKGKMR R+Y GPL++ + ++KA RN+ G PG H Sbjct: 23 VELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAH 242
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_THEAC (50S ribosomal protein L4P OS=Thermoplasma acidophilum GN=rpl4p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.995e-25 Identity = 72/241 (29.88%), Postives = 114/241 (47.30%), Query Frame = 3 Query: 81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGG 803 + + S+ G+M + + LP+V +R DI+ IS + RQPY S AG + + G +SR+PR+ GG A G G+ + + + KIN +++ V RGH+ + ++P+VV D E + KT A+ +LK +G Y D E++++ + IR G+GKMR RRY K L+V A + +KAFR++PG PGG Sbjct: 5 VPIYSVSGEMKGE----IDLPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIV--ARNSSAMKAFRSLPGVDIASPNSLSIRKLAPGG 234
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_HALWD (50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl4p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.995e-25 Identity = 74/222 (33.33%), Postives = 110/222 (49.55%), Query Frame = 3 Query: 84 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749 T+ +L GD A T+ LP V + RPD++ N +QPY AG +T AES+G+GR ++ +PR G R Q GR P K + + +N +++ PS V RGH+ E E+PLVVSD E + KT + VL+ +G +AD ++ +++ IR G+GK R R+Y K L + S E + KA RN+ G Sbjct: 4 TIHNLNGDKA----DTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPR-ENGQARRVPQAV------SGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSDEFEELIKTQEVVDVLESLGVHADIVRSDENKSIRAGRGKTRGRKYRRPKSILFITSDEPS---KAARNLAG 211
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_THEGJ (50S ribosomal protein L4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl4p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 3.912e-25 Identity = 78/242 (32.23%), Postives = 111/242 (45.87%), Query Frame = 3 Query: 81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 + V +LEG+ + + LP V RPD++ + QP AG + E+ G G ++R+ R+ AF RGGR P K+ + IN ++R P LV ARGH ++ VP PLVV D + V KT+ ++ K++G + D E+AK + IR GKGKMR RRY KGPL+V A+ +V+ RN PG PG H Sbjct: 3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTPPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANPDLVRARGHVVDNVPAFPLVVVDDLQKVFKTAQTREIFKKLGIWDDIERAKRNTKIRAGKGKMRGRRYKKAKGPLIVV-AKNEGIVQGARNHPGVDVVTVDNLGVELLAPGTH 235
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 6.903e-25 Identity = 75/223 (33.63%), Postives = 106/223 (47.53%), Query Frame = 3 Query: 81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749 + V +L+G D + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ E + KT L V K + AD EKAKD I+ G+ K+R R+Y + LVV + + + A RN+ G Sbjct: 3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAADVEKAKDGIKIKAGRAKLRGRKYKKPRSVLVVV-GDACEAIAASRNLAG 214 HSP 2 Score: 23.483 bits (49), Expect = 6.903e-25 Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKLDEFNGNF 873 GR +WT++A EK+ NG F Sbjct: 235 GRLTLWTENAIEKI---NGRF 252 The following BLAST results are available for this feature:
BLAST of DY305510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305510 ID=DY305510; Name=DY305510; organism=Citrus sinensis; type=EST; length=1277bpback to top |