DY305510
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULIN (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl4p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 9.635e-24 Identity = 70/225 (31.11%), Postives = 105/225 (46.67%), Query Frame = 3 Query: 132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ + +VKA RNI G PG H Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAH 242
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 9.635e-24 Identity = 71/238 (29.83%), Postives = 108/238 (45.38%), Query Frame = 3 Query: 132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH-----LWAVYCLD 830 + LP V RPD++ + QP AG + E+ G G ++R+ R+ + AF RGGR P K+ + IN ++R +V +RGH ++ VP++PL+V D + V KT ++ K++G + D E+AK+ G+R GKGKMR RRY KGPL+V + +V RN PG PG H +W V ++ Sbjct: 16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVRAGKGKMRGRRYKKAKGPLIVV-GKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIE 248
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULIM (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.258e-23 Identity = 70/225 (31.11%), Postives = 105/225 (46.67%), Query Frame = 3 Query: 132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ + +VKA RNI G PG H Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAH 242
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULIK (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl4p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.258e-23 Identity = 70/225 (31.11%), Postives = 105/225 (46.67%), Query Frame = 3 Query: 132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ + +VKA RNI G PG H Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAH 242
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULIA (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl4p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.258e-23 Identity = 70/225 (31.11%), Postives = 105/225 (46.67%), Query Frame = 3 Query: 132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ + +VKA RNI G PG H Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAH 242
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.258e-23 Identity = 75/242 (30.99%), Postives = 112/242 (46.28%), Query Frame = 3 Query: 81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 + V +LEG+ + + LP V RPD++ + QP +AG + E+ G G ++R+ R+ AF GGR P K+ + IN ++R LV ARGH ++ V ++PLVV+D + V KT+ ++ K++G + D E+AK + IR GKGKMR RRY KGPL+V A+ +V+ RN PG PG H Sbjct: 3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRYKKAKGPLIVV-AKNEGIVQGARNHPGVDVVTVDNLGVEYLAPGTH 235
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METTP (50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl4p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.644e-23 Identity = 74/234 (31.62%), Postives = 106/234 (45.30%), Query Frame = 3 Query: 105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 D++ + + LP + RPD++ N QPY AG TSA SWG G VSR+PR+ G + A M RGGR P + KIN ++ P +V ARGH E+P+VV ES+ KTS + L G + D +AK+ + +R GKGK+R RR+ + L+V +A+ + +A RN+PG PG H Sbjct: 7 DISGNPVGEIVLPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRVPRIVTGR-----RAAAVPMARGGRASHPPVPSKVLSEKINEKERIKAIRSAVAATAKPDIVAARGHLFSG--ELPIVVRGEIESISKTSELRRFLMAAGLWDDVMRAKNGRKVRAGKGKIRGRRFRQPRSILIVAAADNG-IGRAARNLPGVDFVTADRLNAELLAPGTH 232
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METVS (50S ribosomal protein L4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl4p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.120e-23 Identity = 73/223 (32.74%), Postives = 104/223 (46.64%), Query Frame = 3 Query: 81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749 + V +L+G + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN ++ +V ARGHKIE VP +PLVV+ ES+ KT L V K + AD E+AKD I+ G+ K+R R+Y + LVV + V A RN+ G Sbjct: 3 VKVYNLDGS----EKGAIELPSVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEADLERAKDGIKIKAGRAKLRGRKYKKPRSVLVVV-GDACDAVAASRNLAG 214 HSP 2 Score: 24.2534 bits (51), Expect = 2.120e-23 Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1 Query: 811 GRFIVWTKSAFEKLDE 858 GR +WT++A EKL E Sbjct: 235 GRLTLWTENAIEKLKE 250
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 2.803e-23 Identity = 70/234 (29.91%), Postives = 105/234 (44.87%), Query Frame = 3 Query: 105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806 D+ + + LP +R D++ V + + QP AG +TSA S+G ++R+PRV G+ A GGR+ P + ++ ++N +K+ + V RGH + ++ +P++V D + KT ++VL+ + Y D E+ KD IR GKGKMR RRY KGPL V VKA NIPG PGGH Sbjct: 14 DLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVK-----TTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLAPGGH 241
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METB6 (50S ribosomal protein L4P OS=Methanoregula boonei (strain 6A8) GN=rpl4p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.803e-23 Identity = 69/221 (31.22%), Postives = 109/221 (49.32%), Query Frame = 3 Query: 87 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749 V+++EG +A D + LP + RPD++ + RQP+ AG +SA WG+GR S +PR+ G + A +GGR P + ++IN +K+ L+ +RGH+ E +PL+ D E++ KT + L IG Y+D E++K+S+ +R G+GK+R RRY RK L+V S +A RN+ G Sbjct: 5 VKTIEGGVAKD----IELPAMFSEEYRPDLIRKAVLALQSTRRQPHGSYPYAGICSSAVGWGSGRGASHVPRLKNGS-----RAAKVPQAKGGREAHPPVTAKVLIKEINAKEKQKAFRSAVAASIRADLISSRGHRFEGT--VPLIFEDKFENLAKTQEVISALTNIGVYSDIERSKESRKVRAGRGKLRGRRYKQRKSLLIVTSGPE---FRAARNLAG 211 The following BLAST results are available for this feature:
BLAST of DY305510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305510 ID=DY305510; Name=DY305510; organism=Citrus sinensis; type=EST; length=1277bpback to top |