DY305510

Overview
NameDY305510
Unique NameDY305510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1277
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULIN (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.635e-24
Identity = 70/225 (31.11%), Postives = 105/225 (46.67%), Query Frame = 3
Query:  132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGKMR R+Y    GPL++     + +VKA RNI G               PG H
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAH 242          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.635e-24
Identity = 71/238 (29.83%), Postives = 108/238 (45.38%), Query Frame = 3
Query:  132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH-----LWAVYCLD 830
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V +RGH ++ VP++PL+V D  + V KT    ++ K++G + D E+AK+  G+R GKGKMR RRY   KGPL+V   +   +V   RN PG               PG H     +W V  ++
Sbjct:   16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVRAGKGKMRGRRYKKAKGPLIVV-GKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIE 248          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULIM (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.258e-23
Identity = 70/225 (31.11%), Postives = 105/225 (46.67%), Query Frame = 3
Query:  132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGKMR R+Y    GPL++     + +VKA RNI G               PG H
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAH 242          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULIK (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.258e-23
Identity = 70/225 (31.11%), Postives = 105/225 (46.67%), Query Frame = 3
Query:  132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGKMR R+Y    GPL++     + +VKA RNI G               PG H
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAH 242          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULIA (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.258e-23
Identity = 70/225 (31.11%), Postives = 105/225 (46.67%), Query Frame = 3
Query:  132 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGKMR R+Y    GPL++     + +VKA RNI G               PG H
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAH 242          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.258e-23
Identity = 75/242 (30.99%), Postives = 112/242 (46.28%), Query Frame = 3
Query:   81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            + V +LEG+   +    + LP V     RPD++         +  QP     +AG +   E+ G G  ++R+ R+           AF     GGR   P K+ +     IN  ++R              LV ARGH ++ V ++PLVV+D  + V KT+   ++ K++G + D E+AK +  IR GKGKMR RRY   KGPL+V  A+   +V+  RN PG               PG H
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRYKKAKGPLIVV-AKNEGIVQGARNHPGVDVVTVDNLGVEYLAPGTH 235          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METTP (50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.644e-23
Identity = 74/234 (31.62%), Postives = 106/234 (45.30%), Query Frame = 3
Query:  105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            D++ +    + LP +     RPD++         N  QPY     AG  TSA SWG G  VSR+PR+  G      + A   M RGGR   P    +    KIN  ++             P +V ARGH      E+P+VV    ES+ KTS   + L   G + D  +AK+ + +R GKGK+R RR+   +  L+V +A+   + +A RN+PG               PG H
Sbjct:    7 DISGNPVGEIVLPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRVPRIVTGR-----RAAAVPMARGGRASHPPVPSKVLSEKINEKERIKAIRSAVAATAKPDIVAARGHLFSG--ELPIVVRGEIESISKTSELRRFLMAAGLWDDVMRAKNGRKVRAGKGKIRGRRFRQPRSILIVAAADNG-IGRAARNLPGVDFVTADRLNAELLAPGTH 232          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METVS (50S ribosomal protein L4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.120e-23
Identity = 73/223 (32.74%), Postives = 104/223 (46.64%), Query Frame = 3
Query:   81 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749
            + V +L+G         + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++               +V ARGHKIE VP +PLVV+   ES+ KT   L V K +   AD E+AKD   I+ G+ K+R R+Y   +  LVV   +    V A RN+ G
Sbjct:    3 VKVYNLDGS----EKGAIELPSVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEADLERAKDGIKIKAGRAKLRGRKYKKPRSVLVVV-GDACDAVAASRNLAG 214          

HSP 2 Score: 24.2534 bits (51), Expect = 2.120e-23
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDE 858
            GR  +WT++A EKL E
Sbjct:  235 GRLTLWTENAIEKLKE 250          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 2.803e-23
Identity = 70/234 (29.91%), Postives = 105/234 (44.87%), Query Frame = 3
Query:  105 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGH 806
            D+  +    + LP      +R D++  V  +    + QP      AG +TSA S+G    ++R+PRV        G+ A      GGR+  P  + ++   ++N  +K+             + V  RGH + ++  +P++V D    + KT   ++VL+ +  Y D E+ KD   IR GKGKMR RRY   KGPL V        VKA  NIPG               PGGH
Sbjct:   14 DLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVK-----TTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLAPGGH 241          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_METB6 (50S ribosomal protein L4P OS=Methanoregula boonei (strain 6A8) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.803e-23
Identity = 69/221 (31.22%), Postives = 109/221 (49.32%), Query Frame = 3
Query:   87 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPG 749
            V+++EG +A D    + LP +     RPD++      +    RQP+     AG  +SA  WG+GR  S +PR+  G      + A     +GGR   P    +   ++IN  +K+              L+ +RGH+ E    +PL+  D  E++ KT   +  L  IG Y+D E++K+S+ +R G+GK+R RRY  RK  L+V S       +A RN+ G
Sbjct:    5 VKTIEGGVAKD----IELPAMFSEEYRPDLIRKAVLALQSTRRQPHGSYPYAGICSSAVGWGSGRGASHVPRLKNGS-----RAAKVPQAKGGREAHPPVTAKVLIKEINAKEKQKAFRSAVAASIRADLISSRGHRFEGT--VPLIFEDKFENLAKTQEVISALTNIGVYSDIERSKESRKVRAGRGKLRGRRYKQRKSLLIVTSGPE---FRAARNLAG 211          
The following BLAST results are available for this feature:
BLAST of DY305510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_SULIN9.635e-2431.1150S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_PYRHO9.635e-2429.8350S ribosomal protein L4P OS=Pyrococcus horikoshii... [more]
RL4_SULIM1.258e-2331.1150S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_SULIK1.258e-2331.1150S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_SULIA1.258e-2331.1150S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_PYRKO1.258e-2330.9950S ribosomal protein L4P OS=Pyrococcus kodakaraen... [more]
RL4_METTP1.644e-2331.6250S ribosomal protein L4P OS=Methanosaeta thermoph... [more]
RL4_METVS2.120e-2332.7450S ribosomal protein L4P OS=Methanococcus vanniel... [more]
RL4_SULTO2.803e-2329.9150S ribosomal protein L4P OS=Sulfolobus tokodaii G... [more]
RL4_METB62.803e-2331.2250S ribosomal protein L4P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BA08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305510 ID=DY305510; Name=DY305510; organism=Citrus sinensis; type=EST; length=1277bp
GAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCCCAAAAAAAAACAAA
AAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCCAGTCTTTGGA
AGGTGACATGGCCACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCA
TGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTGTCCACTCTAACATC
TCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCA
GACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCC
GTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAAC
ATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATG
GCACCGTAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCA
TTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATC
GAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGT
GGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCAGATCGGTGCATATG
CTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGT
AAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCCCGCTTGTTGTGTA
CTCAGCCGAGGGTGCTAAGCTTGTCAAGGCTTTTAGGAACATTCCCGGTG
TTGAGGTTGTGAATGTTGAGAGATTGAACTTGTTGAAGCTGGGGCCGGGT
GGCCATCTTTGGGCGGTTTATTGTTTGGACTAAATCGGCTTTTGAGAAGC
TTGATGAATTTAATGGTAATTTTGATAAGGGTTCCAAGAGAAGAAAGGGT
TAAGTGCTGCCTCGTGCTAAAATGGTCAACGCTGAATTGGCTAGGATTAT
AACTCGGAAGAAGTGCAGTCTGGTGTAAGGGCAAATAAAAACTGAGGTAA
AGAGGCCTCCAATGAAAAATAAACCCCCTCAAGAACTTGAAATAACAAAG
TTTTCGGTTTGAACCCATTGGCAAAAAAGGGCCCCGAAAAAAGTTCTCTT
TTGGCGGAAGGGCAAAAAGGGTTTAAAGGCTAAAAAAAGGAAAAAACCCT
CACAAAAAAAAAAGGAAAACCCCCCTCCAAAAAAGGAGAGAGGAGCCTTC
CGGGGAAATAATAGGGGCCCTCCCGGGGGCGAGAGGCAGGGGGGGATAAA
CACAAAAAACGAAAAATATATTTCCCC
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