EY679048

Overview
NameEY679048
Unique NameEY679048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.355e-40
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   54 EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y S GLR YN DN  +G YIAPAF+DKLVVHI KNFM+LPNIK P  LG+ GG
Sbjct:   63 EIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGG 170          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.246e-40
Identity = 81/108 (75.00%), Postives = 90/108 (83.33%), Query Frame = 3
Query:   54 EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            E++E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y S GLR   LDN  +G YIAPAF+DKLVVHITKNFM+LPNIK P  LGI GG
Sbjct:   63 EIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGG 168          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.526e-39
Identity = 82/122 (67.21%), Postives = 94/122 (77.05%), Query Frame = 3
Query:   54 EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG*TTRKILP*ETCFR 419
            EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y SQ L+TY LDN ++G YIAPAFMDKLVVHITKNF++LPNIK P  LG+ GG    K    E  FR
Sbjct:   61 EVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFR 179          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.993e-39
Identity = 79/107 (73.83%), Postives = 89/107 (83.18%), Query Frame = 3
Query:   57 VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            +DE + T  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK P  LGI GG
Sbjct:   52 IDEKRNT--DKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGG 156          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.135e-33
Identity = 71/124 (57.26%), Postives = 86/124 (69.35%), Query Frame = 3
Query:    6 FPPSKGPFLRASRLLAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            FP S     R + +  +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK P  LG+ GG
Sbjct:   45 FPSSS----RTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGG 164          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.892e-22
Identity = 59/119 (49.58%), Postives = 74/119 (62.18%), Query Frame = 3
Query:   30 LRASRLLAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            +R ++L       KQ    RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y SQ   ++N  N  +G YI+PAF+DK+ +HI KNFM LP IK P  LGI GG
Sbjct:   25 VRRAQLQVVAPSRKQ--MGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGG 139          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.786e-14
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 3
Query:   96 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLR 239
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+Y SQGLR
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR 46          
The following BLAST results are available for this feature:
BLAST of EY679048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA_PHAVU2.355e-4072.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU5.246e-4075.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.526e-3967.21Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.993e-3973.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.135e-3357.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.892e-2249.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY3.786e-1483.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-054-E07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679048 ID=EY679048; Name=EY679048; organism=Citrus sinensis; type=EST; length=844bp
CCATTTTTCCACCATCCAAAGGTCCCTTTCTGCGAGCTTCAAGATTACTC
GCTGAAGTCGATGAGAACAAGCAGACCAAGCAAGACAGATGGAAGGGCCT
TGCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTG
CTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCT
GTCATGAGTTCTTATGACTACTTCAGCCAAGGTCTCCGCACATACAACTT
GGACAACACGATCAACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGC
TTGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGCT
CCTCCCTACTTGGGTATTAGGGGAGGATAAACGACAAGGAAAATCTTGCC
ATAGGAAACTTGTTTTCGCCTAGAATGGGCATCAAGCTAATTTATGAGGA
GAGACCGGAGAATAGTATAATGATATTGTCGGAAAATACTGATAAAGTAG
AACAAGGTAGAGGAACCTTGATAGGAGCTTTAACTTATTTGAAAGGAAAA
CAAGTACTGCCCTTGGTTCGAATACTCTGTTCCATTACTGGAAGAATTGG
AAAACAAAACCTGTATAAATGTAAACAACAAAATGGTAAAACAATATATA
ACATAACGTGGGATTTCAAAATTAAGTAAGAATTAACCAATATAAATGAC
AAACTATAACAATCTCCAGACCGATTGATATCACGACCCGTTATCATATC
CACAAAACGTCATAACTCTGATAACAATACGTATTATATTATTTACAAAC
TATACGAAAACATCAAATCATATATAACTCATGTATCATTATAT
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