DY305501
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_TRIEI (Photosystem I assembly protein ycf4 OS=Trichodesmium erythraeum (strain IMS101) GN=ycf4 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.923e-17 Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951 I GSR+ N+ WA I+ +G + FL+ GISSYL NLL + Q+NF PQGI SFYG+ G +LW T+ G N F + G++ IF GFPGK Sbjct: 16 IIGSRRLSNYLWAIIVTMGGIGFLLSGISSYLKVNLLIVADPTQLNFLPQGIAMSFYGLLGTIYGIFLWLTVIWDLGGGYNDFNQESGQIMIFRRGFPGK 115
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_NOSP7 (Photosystem I assembly protein ycf4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ycf4 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.923e-17 Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951 + GSR+ N++WA I+ LG+ FL+ GISSYL NLL + Q+ F PQG+V YG AGL + +YLW + G N F + G + IF WGFPGK Sbjct: 18 VLGSRRFSNYWWATIVTLGASGFLLAGISSYLKVNLLIVSDPTQLVFVPQGLVMGLYGAAGLLLATYLWLVILLDVGGGYNEFNQETGTIKIFRWGFPGK 117
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_GRATL (Photosystem I assembly protein ycf4 OS=Gracilaria tenuistipitata var. liui GN=ycf4 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 6.513e-17 Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951 I GSR+ N+FWA I+ LG L F +VG+SSYL LL S + F PQGI+ +FYG A + I+ +LW T+ +G N F G + I+ GFPGK Sbjct: 12 ILGSRRISNYFWATIILLGGLSFFLVGLSSYLKIELLPFTKSTDLLFLPQGIIMTFYGTAAILISLFLWLTIIWNIGSGYNEFNRDIGLVTIYRLGFPGK 111
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CYAPA (Photosystem I assembly protein ycf4 OS=Cyanophora paradoxa GN=ycf4 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.111e-16 Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 1 Query: 646 EFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948 + I GSR+ N++WA + LGS F++ GISSY NLL + Q F PQGI YG G ++ YLW + G N + KKG + IF WGFPG Sbjct: 13 DLITGSRRLSNYWWAITIGLGSSGFILAGISSYTKINLLPFTDTTQFLFIPQGITMLLYGTIGFLLDIYLWLLILWNVGAGYNEYNKKKGTVSIFRWGFPG 113
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SYNP2 (Photosystem I assembly protein ycf4 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ycf4 PE=3 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 7.961e-15 Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 1 Query: 652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951 I GSR+ N WA + +G + FL+ G+SSY +NLL + I F PQG +FYG+AG +++YLW G N F + GK+ IF GF GK Sbjct: 17 ILGSRRFSNMLWASVSAIGGIGFLLAGLSSYFHKNLLGVSDPSNIQFIPQGAALTFYGVAGTLLSAYLWFVFFLDVGGGYNEFNKETGKVTIFRNGFVGK 116
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_THAPS (Photosystem I assembly protein ycf4 OS=Thalassiosira pseudonana GN=ycf4 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.774e-14 Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 1 Query: 646 EFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPL 981 E I GSR+ N+FWA +L +G L FL+ GISSYL NLL + ++ F PQGIV FYG ++ Y+ TL +G N + + + + GFPGK L PL Sbjct: 8 EKIVGSRRFSNYFWASLLLVGGLMFLLAGISSYLKINLLPFANTTELVFIPQGIVMMFYGTLSFGLSIYIMATLFWDIGSGYNEYNKVENLVKVVRRGFPGKNREILLTYPL 119
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_PHAVU (Photosystem I assembly protein ycf4 OS=Phaseolus vulgaris GN=ycf4 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.774e-14 Identity = 53/123 (43.09%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 625 RSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINF--FPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPLEK 987 RS+ + + I S K N F A I+FLGSL L+V ISSYL +L LF + NF PQG +FYGI GLFI+ YLW L G + F K K+ WGFPGK + IP+ + Sbjct: 7 RSKEVLIYSITES-KISNIFSALIIFLGSLGLLLVAISSYLGMDLF-LFSEEISNFPFIPQGATMAFYGIGGLFISFYLWWILLWNIGGGFDIFDKKNKKVCFIRWGFPGKNRRIILKIPMNE 127
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SYNJA (Photosystem I assembly protein ycf4 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ycf4 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.025e-14 Identity = 55/163 (33.74%), Postives = 76/163 (46.63%), Query Frame = 1 Query: 625 RSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPLEKNSCHPKK---------N*KKVIWVPGPFIEKNKGRGAISLKG 1086 RSE + + GSR+P +FWA L G L F + G+SSY RNLL + F PQGI FYG+ G Y W +L G N F + K+ + GFPGK R++ LE + + N ++ I++ + KGRG I L G Sbjct: 9 RSENLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYFHRNLLPFSDPASLVFIPQGIAMLFYGVLGSLAGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKN----REVRLEYDFAEVQSLRVELREGFNPRRAIYL------RIKGRGDIPLTG 161
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SYNJB (Photosystem I assembly protein ycf4 OS=Synechococcus sp. GN=ycf4 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.160e-14 Identity = 53/154 (34.42%), Postives = 73/154 (47.40%), Query Frame = 1 Query: 652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPLEKNSCHPKK---------N*KKVIWVPGPFIEKNKGRGAISLKG 1086 + GSR+P +FWA L G L F + G+SSYL RNLL + F PQGI FYG+ G Y W +L G N F + K+ + GFPGK R++ LE + + N ++ I++ + KGRG I L G Sbjct: 18 VIGSRRPSVYFWAVALTGGGLGFTLAGLSSYLHRNLLPFSDPASLVFIPQGIAMLFYGVLGSLAGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKN----REVRLEYDFADVQSLRVELREGLNPRRAIYL------RVKGRGDIPLTG 161
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SCEOB (Photosystem I assembly protein ycf4 OS=Scenedesmus obliquus GN=ycf4 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.150e-13 Identity = 43/123 (34.96%), Postives = 60/123 (48.78%), Query Frame = 1 Query: 649 FIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQ----------------------INFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951 FI G R+ N++WA ++ +GS FL+ GISSY+ +L S S INFFPQG++ FYG G ++ Y W + G N F K+ + IF WG+PGK Sbjct: 11 FIIGERRFSNYWWATVILIGSFGFLLTGISSYISTSLNSTALSSNIESQMQLPFFLSMLKNSNSTGAINFFPQGLLMCFYGSLGFLLSIYWWCLIFWNVGGGFNEFNKKENFIRIFRWGYPGK 133 The following BLAST results are available for this feature:
BLAST of DY305501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 131
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305501 ID=DY305501; Name=DY305501; organism=Citrus sinensis; type=EST; length=1253bpback to top |