DY305501

Overview
NameDY305501
Unique NameDY305501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_TRIEI (Photosystem I assembly protein ycf4 OS=Trichodesmium erythraeum (strain IMS101) GN=ycf4 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.923e-17
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            I GSR+  N+ WA I+ +G + FL+ GISSYL  NLL +    Q+NF PQGI  SFYG+ G     +LW T+      G N F  + G++ IF  GFPGK
Sbjct:   16 IIGSRRLSNYLWAIIVTMGGIGFLLSGISSYLKVNLLIVADPTQLNFLPQGIAMSFYGLLGTIYGIFLWLTVIWDLGGGYNDFNQESGQIMIFRRGFPGK 115          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_NOSP7 (Photosystem I assembly protein ycf4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ycf4 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.923e-17
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            + GSR+  N++WA I+ LG+  FL+ GISSYL  NLL +    Q+ F PQG+V   YG AGL + +YLW  +      G N F  + G + IF WGFPGK
Sbjct:   18 VLGSRRFSNYWWATIVTLGASGFLLAGISSYLKVNLLIVSDPTQLVFVPQGLVMGLYGAAGLLLATYLWLVILLDVGGGYNEFNQETGTIKIFRWGFPGK 117          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_GRATL (Photosystem I assembly protein ycf4 OS=Gracilaria tenuistipitata var. liui GN=ycf4 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.513e-17
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            I GSR+  N+FWA I+ LG L F +VG+SSYL   LL    S  + F PQGI+ +FYG A + I+ +LW T+     +G N F    G + I+  GFPGK
Sbjct:   12 ILGSRRISNYFWATIILLGGLSFFLVGLSSYLKIELLPFTKSTDLLFLPQGIIMTFYGTAAILISLFLWLTIIWNIGSGYNEFNRDIGLVTIYRLGFPGK 111          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CYAPA (Photosystem I assembly protein ycf4 OS=Cyanophora paradoxa GN=ycf4 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.111e-16
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  646 EFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            + I GSR+  N++WA  + LGS  F++ GISSY   NLL    + Q  F PQGI    YG  G  ++ YLW  +      G N +  KKG + IF WGFPG
Sbjct:   13 DLITGSRRLSNYWWAITIGLGSSGFILAGISSYTKINLLPFTDTTQFLFIPQGITMLLYGTIGFLLDIYLWLLILWNVGAGYNEYNKKKGTVSIFRWGFPG 113          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SYNP2 (Photosystem I assembly protein ycf4 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ycf4 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 7.961e-15
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            I GSR+  N  WA +  +G + FL+ G+SSY  +NLL +     I F PQG   +FYG+AG  +++YLW         G N F  + GK+ IF  GF GK
Sbjct:   17 ILGSRRFSNMLWASVSAIGGIGFLLAGLSSYFHKNLLGVSDPSNIQFIPQGAALTFYGVAGTLLSAYLWFVFFLDVGGGYNEFNKETGKVTIFRNGFVGK 116          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_THAPS (Photosystem I assembly protein ycf4 OS=Thalassiosira pseudonana GN=ycf4 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.774e-14
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  646 EFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPL 981
            E I GSR+  N+FWA +L +G L FL+ GISSYL  NLL    + ++ F PQGIV  FYG     ++ Y+  TL     +G N +   +  + +   GFPGK    L   PL
Sbjct:    8 EKIVGSRRFSNYFWASLLLVGGLMFLLAGISSYLKINLLPFANTTELVFIPQGIVMMFYGTLSFGLSIYIMATLFWDIGSGYNEYNKVENLVKVVRRGFPGKNREILLTYPL 119          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_PHAVU (Photosystem I assembly protein ycf4 OS=Phaseolus vulgaris GN=ycf4 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.774e-14
Identity = 53/123 (43.09%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  625 RSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINF--FPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPLEK 987
            RS+ + +  I  S K  N F A I+FLGSL  L+V ISSYL  +L  LF  +  NF   PQG   +FYGI GLFI+ YLW  L      G + F  K  K+    WGFPGK    +  IP+ +
Sbjct:    7 RSKEVLIYSITES-KISNIFSALIIFLGSLGLLLVAISSYLGMDLF-LFSEEISNFPFIPQGATMAFYGIGGLFISFYLWWILLWNIGGGFDIFDKKNKKVCFIRWGFPGKNRRIILKIPMNE 127          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SYNJA (Photosystem I assembly protein ycf4 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ycf4 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.025e-14
Identity = 55/163 (33.74%), Postives = 76/163 (46.63%), Query Frame = 1
Query:  625 RSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPLEKNSCHPKK---------N*KKVIWVPGPFIEKNKGRGAISLKG 1086
            RSE +    + GSR+P  +FWA  L  G L F + G+SSY  RNLL       + F PQGI   FYG+ G     Y W +L      G N F  +  K+ +   GFPGK     R++ LE +    +          N ++ I++      + KGRG I L G
Sbjct:    9 RSENLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYFHRNLLPFSDPASLVFIPQGIAMLFYGVLGSLAGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKN----REVRLEYDFAEVQSLRVELREGFNPRRAIYL------RIKGRGDIPLTG 161          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SYNJB (Photosystem I assembly protein ycf4 OS=Synechococcus sp. GN=ycf4 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.160e-14
Identity = 53/154 (34.42%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPLEKNSCHPKK---------N*KKVIWVPGPFIEKNKGRGAISLKG 1086
            + GSR+P  +FWA  L  G L F + G+SSYL RNLL       + F PQGI   FYG+ G     Y W +L      G N F  +  K+ +   GFPGK     R++ LE +    +          N ++ I++      + KGRG I L G
Sbjct:   18 VIGSRRPSVYFWAVALTGGGLGFTLAGLSSYLHRNLLPFSDPASLVFIPQGIAMLFYGVLGSLAGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKN----REVRLEYDFADVQSLRVELREGLNPRRAIYL------RVKGRGDIPLTG 161          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SCEOB (Photosystem I assembly protein ycf4 OS=Scenedesmus obliquus GN=ycf4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.150e-13
Identity = 43/123 (34.96%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  649 FIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQ----------------------INFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            FI G R+  N++WA ++ +GS  FL+ GISSY+  +L S   S                        INFFPQG++  FYG  G  ++ Y W  +      G N F  K+  + IF WG+PGK
Sbjct:   11 FIIGERRFSNYWWATVILIGSFGFLLTGISSYISTSLNSTALSSNIESQMQLPFFLSMLKNSNSTGAINFFPQGLLMCFYGSLGFLLSIYWWCLIFWNVGGGFNEFNKKENFIRIFRWGYPGK 133          
The following BLAST results are available for this feature:
BLAST of DY305501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
YCF4_TRIEI2.923e-1746.00Photosystem I assembly protein ycf4 OS=Trichodesmi... [more]
YCF4_NOSP72.923e-1746.00Photosystem I assembly protein ycf4 OS=Nostoc punc... [more]
YCF4_GRATL6.513e-1745.00Photosystem I assembly protein ycf4 OS=Gracilaria ... [more]
YCF4_CYAPA1.111e-1642.57Photosystem I assembly protein ycf4 OS=Cyanophora ... [more]
YCF4_SYNP27.961e-1541.00Photosystem I assembly protein ycf4 OS=Synechococc... [more]
YCF4_THAPS1.774e-1440.18Photosystem I assembly protein ycf4 OS=Thalassiosi... [more]
YCF4_PHAVU1.774e-1443.09Photosystem I assembly protein ycf4 OS=Phaseolus v... [more]
YCF4_SYNJA3.025e-1433.74Photosystem I assembly protein ycf4 OS=Synechococc... [more]
YCF4_SYNJB5.160e-1434.42Photosystem I assembly protein ycf4 OS=Synechococc... [more]
YCF4_SCEOB1.150e-1334.96Photosystem I assembly protein ycf4 OS=Scenedesmus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AH07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305501 ID=DY305501; Name=DY305501; organism=Citrus sinensis; type=EST; length=1253bp
GTAGAATATGAATTCTAATTATTATAGGATATCCTTATACCAATAACAGG
TACAAATATTAAATCGAGGTACCCTTTCTATGACAATTCTCAACAGCTTT
CCCTCTATTTTTGTGCCTTTAGTGGGCCTAGTATTTCCGGCAATGGCAAT
GGCTTCGTTATTTCTTTATCTTGAAAAAAATAAGATTTTGTAAATCCGAT
CGGATCAAGGTCAAATCTCGTCTAGTTTTTTTCAAGACTTAGCGATGACG
GATATCCATTTAGTAGAATAGTGTATAAGACTAAGAGGCGGCTTTCCCCG
AACATAAACGAAGAGCTCTTATGCATGTGTAAACATGATATATAGGTACA
TAAATTCTATCTATTTTGAACAAGAGGCTGTGATCCGAACTCATGTCTGC
AATGAAAGTCAATGGTACCAATCTACAGGGACTTATATGAAGGGGATACT
CTTATTTTATTCTACCTCACCAATTCGATGAATTATTGCTAAGAGCTCAC
GTCCAAATAGTACTAGTTGATGAGAGTTACTTCGGAAATACAAAAAGTAA
ACTAAAATGGATTTGGTTTTGGTTATTTCCCCAATTCCAATAAAATGCAA
CTGGAGCTAGTATGTATGAGTTGGCGATCAGAATATATATGGGTAGAATT
TATAGCGGGCTCTCGCAAACCAGGCAATTTCTTCTGGGCCTTTATCCTTT
TTTTAGGCTCATTANGATTCTTAATGGTTGGAATTTCTAGTTATCTTGAT
AGGAATTTGCTATCTTTATTTCCGTCGCAGCAAATCAATTTTTTTCCACA
AGGGATCGTGAGGTCTTTCTACGGGATCGCGGGTCTCTTTATTAATTCCT
ATTTGTGGGGCACATTATAAGGAAGGTGGGTAACGGGTAATAATCCATTT
AGAACCAAAAAGGGAAAAATGGGAATTTTTCTTTGGGGATTTCCTGGAAA
AAAACCACCGCAGCTCAGAGACATTCCTTTGGAAAAAAATTCCTGCCATC
CAAAAAAAAATTAAAAAAAGGTAATTTGGGTGCCCGGGCCTTTTATTGAG
AAAAACAAAGGCAGGGGGGCCATCTCCCTCAAAGGATGTGAAGGAAATAT
TAAAGCCGCAAGGAACATATAAGAAAAGGGGTTCTGGAAAGGATGACAAA
TAATTTCGTGTAGCATCGAGATTCAGGAATAATTTAAAGGAAAAAGAAAA
ATGATAAGAAAAAAAAACATCACTCTGTCATTGGCAGCAAAAGAAAGAAC
AAC
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