DY305501

Overview
NameDY305501
Unique NameDY305501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_ODOSI (Photosystem I assembly protein ycf4 OS=Odontella sinensis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.961e-13
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPL 981
            I GSR+  N+FWA  L  G + FL+ GISSY   N L     +++ F PQG+V SFYG   + +  Y+ GTL     +G N +   +  + I   GFPGK    L   PL
Sbjct:   10 IIGSRRFSNYFWAVFLCSGGISFLLAGISSYFKINFLPFANPKELAFIPQGLVMSFYGTLSIALAIYILGTLFWDIGSGYNEYNKVENLVKIVRKGFPGKNREILLTYPL 119          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SOYBN (Photosystem I assembly protein ycf4 OS=Glycine max GN=ycf4 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 3.345e-13
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  622 WRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQIN------------FFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFL-WGFPGKKPPQLRDIPLEK 987
            +RS+ + +  +A  R+  N FWA    LGSL  L V ISSYL  +L   F S++I+            F PQG   +FYGIAGLF +S+ +G++    + G      KKGK   F+ WGFPGK    + +IP+ +
Sbjct:    5 FRSDDVLIYSMAEVRRTSNLFWAVFTLLGSLGLLFVAISSYLGMDL--FFISEKISDFSFIPDFIYFPFIPQGATMAFYGIAGLF-SSFYFGSIIFWDIGGGFDIFNKKGKKVRFVRWGFPGKNRRIILEIPMNE 136          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_RHDSA (Photosystem I assembly protein ycf4 OS=Rhodomonas salina GN=ycf4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.368e-13
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  646 EFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            + I GSR+  N+ W  I F G + FL+ G+SSYL   LL    ++ I F PQGIV +FYG  G+ ++ +L   +      G N +    G + IF  GFPGK+
Sbjct:    6 DLILGSRRFSNYLWTLISFSGGIGFLLAGLSSYLGVQLLPFGNTETIVFIPQGIVMTFYGTIGILLSLFLLLNISLNVGGGYNSYDKSTGAIQIFRLGFPGKR 108          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CHLRE (Photosystem I assembly protein ycf4 OS=Chlamydomonas reinhardtii GN=ycf4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.705e-13
Identity = 49/116 (42.24%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLD-RNLLSL------FPSQQ-------INFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGN--NPFRTKKGKMGIFLWGFPGK 951
            I G R+  N++WA ++FLGS  FL  GI SYL   N LSL      F S+        + FFPQG++ SFYG  G  ++ Y W  L   W  G   N F  K+G + IF WG+PGK
Sbjct:   13 IVGERRFSNYWWAIVIFLGSCGFLATGICSYLGIPNWLSLLNIGTTFSSETETLASGIVPFFPQGLLMSFYGSLGFLLSIY-WSLL-IFWNVGGGFNEFNKKEGFVRIFRWGYPGK 126          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_PHATR (Photosystem I assembly protein ycf4 OS=Phaeodactylum tricornutum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.732e-13
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            I GSR+  N+FWAF L +G L FL+ GISSY   NLL    + ++ F PQG+V  FYG   L I+ Y   T+     +G N +   +  + +   GFPGK
Sbjct:   10 IIGSRRFSNYFWAFFLLVGGLGFLLAGISSYFKVNLLPFTNTTELVFIPQGLVMMFYGALSLGISIYTLLTIILDIGSGYNEYNRIENLVKVVRKGFPGK 109          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_GLOVI (Photosystem I assembly protein ycf4 OS=Gloeobacter violaceus GN=ycf4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.271e-12
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            + GSR+P  +F+A +L LG L FL  G+S +++ NLL    ++ +  FPQG+   FYG      + Y W  L     +G N F  +  K+ +F  GFPGK
Sbjct:   17 VPGSRRPSTYFFALVLTLGGLGFLFAGLSPFVETNLLPFSDTRGLTRFPQGVTMIFYGALATLFSLYYWLVLALDVGSGYNEFDKQNKKVTLFRRGFPGK 116          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_BIGNA (Photosystem I assembly protein ycf4 OS=Bigelowiella natans GN=ycf4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.271e-12
Identity = 43/106 (40.57%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  634 YIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            +I+   + GS+K  N  +A  +FLGS+ FL   I S+LD    SL  +  I FFPQG+V  FY + GL    Y   T   +   G N F  K+  + IF WGFPGK
Sbjct:    5 FIYRYTVLGSKKISNLIFAIFIFLGSIFFLKASIFSFLDLKTNSL--NGNIVFFPQGLVMGFYSLLGLLFTFYSLLTFFLKIGFGYNEFNKKENVIRIFRWGFPGK 108          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: PSAI_CITSI (Photosystem I reaction center subunit VIII OS=Citrus sinensis GN=psaI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.660e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 2
Query:   80 MTILNSFPSIFVPLVGLVFPAMAMASLFLYLEKNKIL 190
            MTILNSFPSIFVPLVGLVFPAMAMASLFLYLEKNKIL
Sbjct:    1 MTILNSFPSIFVPLVGLVFPAMAMASLFLYLEKNKIL 37          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_LEPTE (Photosystem I assembly protein ycf4 OS=Leptosira terrestris GN=ycf4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.239e-12
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLD-RNLLSL-----FPSQQ-----------INFFPQGIVRSFYGIAGLFINSYLW 858
            I GSR+  N++WAFI+ LGS+ FL+ GISSY + +NLL L     F ++            I FFPQG+V  FYGI GLF++ YLW
Sbjct:   31 IQGSRRFSNYWWAFIVCLGSIGFLLTGISSYFEFQNLLHLQNYFSFANEAQSSLNKVELPIILFFPQGLVMCFYGILGLFLSFYLW 116          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_EMIHU (Photosystem I assembly protein ycf4 OS=Emiliania huxleyi GN=ycf4 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.131e-11
Identity = 38/101 (37.62%), Postives = 53/101 (52.48%), Query Frame = 1
Query:  649 FIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            +I+GSR+  N FWA  + LG L F + G SSY + NLL    +  I F PQGI+  FYG   L +  +L  T+   W  G         ++ ++  GFPGK
Sbjct:    4 YISGSRRLSNIFWALTITLGGLGFFLNGCSSYFNTNLLIFSDASSIAFIPQGIILMFYGTVALILGLFLCLTI--IWDVGFGYNDYNADQITVYRKGFPGK 102          
The following BLAST results are available for this feature:
BLAST of DY305501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
YCF4_ODOSI1.961e-1339.09Photosystem I assembly protein ycf4 OS=Odontella s... [more]
YCF4_SOYBN3.345e-1337.78Photosystem I assembly protein ycf4 OS=Glycine max... [more]
YCF4_RHDSA4.368e-1338.83Photosystem I assembly protein ycf4 OS=Rhodomonas ... [more]
YCF4_CHLRE5.705e-1342.24Photosystem I assembly protein ycf4 OS=Chlamydomon... [more]
YCF4_PHATR9.732e-1341.00Photosystem I assembly protein ycf4 OS=Phaeodactyl... [more]
YCF4_GLOVI1.271e-1237.00Photosystem I assembly protein ycf4 OS=Gloeobacter... [more]
YCF4_BIGNA1.271e-1240.57Photosystem I assembly protein ycf4 OS=Bigelowiell... [more]
PSAI_CITSI1.660e-12100.00Photosystem I reaction center subunit VIII OS=Citr... [more]
YCF4_LEPTE8.239e-1247.67Photosystem I assembly protein ycf4 OS=Leptosira t... [more]
YCF4_EMIHU3.131e-1137.62Photosystem I assembly protein ycf4 OS=Emiliania h... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AH07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305501 ID=DY305501; Name=DY305501; organism=Citrus sinensis; type=EST; length=1253bp
GTAGAATATGAATTCTAATTATTATAGGATATCCTTATACCAATAACAGG
TACAAATATTAAATCGAGGTACCCTTTCTATGACAATTCTCAACAGCTTT
CCCTCTATTTTTGTGCCTTTAGTGGGCCTAGTATTTCCGGCAATGGCAAT
GGCTTCGTTATTTCTTTATCTTGAAAAAAATAAGATTTTGTAAATCCGAT
CGGATCAAGGTCAAATCTCGTCTAGTTTTTTTCAAGACTTAGCGATGACG
GATATCCATTTAGTAGAATAGTGTATAAGACTAAGAGGCGGCTTTCCCCG
AACATAAACGAAGAGCTCTTATGCATGTGTAAACATGATATATAGGTACA
TAAATTCTATCTATTTTGAACAAGAGGCTGTGATCCGAACTCATGTCTGC
AATGAAAGTCAATGGTACCAATCTACAGGGACTTATATGAAGGGGATACT
CTTATTTTATTCTACCTCACCAATTCGATGAATTATTGCTAAGAGCTCAC
GTCCAAATAGTACTAGTTGATGAGAGTTACTTCGGAAATACAAAAAGTAA
ACTAAAATGGATTTGGTTTTGGTTATTTCCCCAATTCCAATAAAATGCAA
CTGGAGCTAGTATGTATGAGTTGGCGATCAGAATATATATGGGTAGAATT
TATAGCGGGCTCTCGCAAACCAGGCAATTTCTTCTGGGCCTTTATCCTTT
TTTTAGGCTCATTANGATTCTTAATGGTTGGAATTTCTAGTTATCTTGAT
AGGAATTTGCTATCTTTATTTCCGTCGCAGCAAATCAATTTTTTTCCACA
AGGGATCGTGAGGTCTTTCTACGGGATCGCGGGTCTCTTTATTAATTCCT
ATTTGTGGGGCACATTATAAGGAAGGTGGGTAACGGGTAATAATCCATTT
AGAACCAAAAAGGGAAAAATGGGAATTTTTCTTTGGGGATTTCCTGGAAA
AAAACCACCGCAGCTCAGAGACATTCCTTTGGAAAAAAATTCCTGCCATC
CAAAAAAAAATTAAAAAAAGGTAATTTGGGTGCCCGGGCCTTTTATTGAG
AAAAACAAAGGCAGGGGGGCCATCTCCCTCAAAGGATGTGAAGGAAATAT
TAAAGCCGCAAGGAACATATAAGAAAAGGGGTTCTGGAAAGGATGACAAA
TAATTTCGTGTAGCATCGAGATTCAGGAATAATTTAAAGGAAAAAGAAAA
ATGATAAGAAAAAAAAACATCACTCTGTCATTGGCAGCAAAAGAAAGAAC
AAC
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