DY305501

Overview
NameDY305501
Unique NameDY305501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_AETCO (Photosystem I assembly protein ycf4 OS=Aethionema cordifolium GN=ycf4 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.543e-37
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+E   GSRK  NFFWAFILFLGSL FL+VG SSYL RN++SLFPSQQI FFPQGIV SFYGIAGLFI+ YLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSESIWIELRTGSRKTSNFFWAFILFLGSLGFLLVGTSSYLGRNVISLFPSQQIIFFPQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_ATRBE (Photosystem I assembly protein ycf4 OS=Atropa belladonna GN=ycf4 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 3.322e-37
Identity = 76/112 (67.86%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRSE+IW+E I GSRK  NF WAFILFLGSL FL+VG SSYL RNL+S FP+QQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MTWRSEHIWIELITGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRNLISFFPTQQIVFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CARCL (Photosystem I assembly protein ycf4 OS=Carpobrotus chilensis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.338e-37
Identity = 77/112 (68.75%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRS+ IW+E I GSRK  NF WAFILFLGSL FL+VGISSYL RNL+SLFP QQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MNWRSKRIWIELITGSRKISNFCWAFILFLGSLGFLLVGISSYLGRNLISLFPPQQILFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_BRAOL (Photosystem I assembly protein ycf4 OS=Brassica oleracea GN=ycf4 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.338e-37
Identity = 85/176 (48.30%), Postives = 114/176 (64.77%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPP-----QLRDIPLEKNSCHPKKN*KKVIWVPGPFIEKNKGRGAISLKGCEGNIKAARNI*EK 1128
            M+WRSE+IW++ I+GSRK  NF WAF+LFLGSL F++VG SSYL RNL+S FP QQI FFPQG+V SFYGIAGLFI+ YLW T+     +G + F  K+G + IF WGFPGK         ++DI  ++       + ++V     P++E  +G+GAI L   + N    R I +K
Sbjct:    1 MTWRSEHIWIDLISGSRKKSNFCWAFLLFLGSLGFVLVGTSSYLGRNLISSFPPQQITFFPQGLVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIVLRFLMKDIQSDRTEVKEGVSARRV-----PYME-IRGQGAIPLIRTDENFTTRREIEQK 170          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_NICTO (Photosystem I assembly protein ycf4 OS=Nicotiana tomentosiformis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.666e-37
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRSE+IW+E I GSRK  NF WAFILFLGSL FL+VG SSYL RNL+S FP QQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MTWRSEHIWIELITGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRNLISFFPPQQIVFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDIKEGIVCIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_LOBMA (Photosystem I assembly protein ycf4 OS=Lobularia maritima GN=ycf4 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.400e-37
Identity = 77/112 (68.75%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+EFI GSRK  NF WAFILFLGSL FL+VG SSYL RN +SLF SQQI FFPQGIV SFYGIAGLFI+ YLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSESIWIEFITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNFISLFASQQIIFFPQGIVMSFYGIAGLFISCYLWCTIFWNVGSGYDLFDRKEGIVRIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_DRANE (Photosystem I assembly protein ycf4 OS=Draba nemorosa GN=ycf4 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.400e-37
Identity = 77/112 (68.75%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+EFI GSRK  NF WAFILFLGSL FL+VG SSYL RN +SLF SQQI FFPQGIV SFYGIAGLFI+ YLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSESIWIEFITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNFISLFASQQIIFFPQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_ACOCL (Photosystem I assembly protein ycf4 OS=Acorus calamus GN=ycf4 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.400e-37
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            M+WRSE+IW+EFI GSRK  NF WA ILFLGSL FL+VG SSYL RNL+S+FPSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG
Sbjct:    1 MNWRSEHIWIEFITGSRKTSNFGWACILFLGSLGFLVVGASSYLGRNLISVFPSQQIVFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPG 111          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_TOBAC (Photosystem I assembly protein ycf4 OS=Nicotiana tabacum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.664e-37
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRSE+IW+E I GSRK  NF WAFILFLGSL FL+VG SSYL RNL+S FP QQI FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MTWRSEHIWIELITGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRNLISFFPPQQIIFFPQGLVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_PHAAO (Photosystem I assembly protein ycf4 OS=Phalaenopsis aphrodite subsp. formosana GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.664e-37
Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRSE+IW+E I GSRK  NF WA ILFLGSL FL+VG SSYL +NL+S+FPSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G M +F WGFPG+
Sbjct:    1 MNWRSEHIWIELITGSRKTSNFCWACILFLGSLGFLVVGTSSYLGKNLISVFPSQQILFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIMSLFRWGFPGR 112          
The following BLAST results are available for this feature:
BLAST of DY305501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
YCF4_AETCO2.543e-3768.75Photosystem I assembly protein ycf4 OS=Aethionema ... [more]
YCF4_ATRBE3.322e-3767.86Photosystem I assembly protein ycf4 OS=Atropa bell... [more]
YCF4_CARCL4.338e-3768.75Photosystem I assembly protein ycf4 OS=Carpobrotus... [more]
YCF4_BRAOL4.338e-3748.30Photosystem I assembly protein ycf4 OS=Brassica ol... [more]
YCF4_NICTO5.666e-3767.86Photosystem I assembly protein ycf4 OS=Nicotiana t... [more]
YCF4_LOBMA7.400e-3768.75Photosystem I assembly protein ycf4 OS=Lobularia m... [more]
YCF4_DRANE7.400e-3768.75Photosystem I assembly protein ycf4 OS=Draba nemor... [more]
YCF4_ACOCL7.400e-3768.47Photosystem I assembly protein ycf4 OS=Acorus cala... [more]
YCF4_TOBAC9.664e-3766.96Photosystem I assembly protein ycf4 OS=Nicotiana t... [more]
YCF4_PHAAO9.664e-3766.07Photosystem I assembly protein ycf4 OS=Phalaenopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AH07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305501 ID=DY305501; Name=DY305501; organism=Citrus sinensis; type=EST; length=1253bp
GTAGAATATGAATTCTAATTATTATAGGATATCCTTATACCAATAACAGG
TACAAATATTAAATCGAGGTACCCTTTCTATGACAATTCTCAACAGCTTT
CCCTCTATTTTTGTGCCTTTAGTGGGCCTAGTATTTCCGGCAATGGCAAT
GGCTTCGTTATTTCTTTATCTTGAAAAAAATAAGATTTTGTAAATCCGAT
CGGATCAAGGTCAAATCTCGTCTAGTTTTTTTCAAGACTTAGCGATGACG
GATATCCATTTAGTAGAATAGTGTATAAGACTAAGAGGCGGCTTTCCCCG
AACATAAACGAAGAGCTCTTATGCATGTGTAAACATGATATATAGGTACA
TAAATTCTATCTATTTTGAACAAGAGGCTGTGATCCGAACTCATGTCTGC
AATGAAAGTCAATGGTACCAATCTACAGGGACTTATATGAAGGGGATACT
CTTATTTTATTCTACCTCACCAATTCGATGAATTATTGCTAAGAGCTCAC
GTCCAAATAGTACTAGTTGATGAGAGTTACTTCGGAAATACAAAAAGTAA
ACTAAAATGGATTTGGTTTTGGTTATTTCCCCAATTCCAATAAAATGCAA
CTGGAGCTAGTATGTATGAGTTGGCGATCAGAATATATATGGGTAGAATT
TATAGCGGGCTCTCGCAAACCAGGCAATTTCTTCTGGGCCTTTATCCTTT
TTTTAGGCTCATTANGATTCTTAATGGTTGGAATTTCTAGTTATCTTGAT
AGGAATTTGCTATCTTTATTTCCGTCGCAGCAAATCAATTTTTTTCCACA
AGGGATCGTGAGGTCTTTCTACGGGATCGCGGGTCTCTTTATTAATTCCT
ATTTGTGGGGCACATTATAAGGAAGGTGGGTAACGGGTAATAATCCATTT
AGAACCAAAAAGGGAAAAATGGGAATTTTTCTTTGGGGATTTCCTGGAAA
AAAACCACCGCAGCTCAGAGACATTCCTTTGGAAAAAAATTCCTGCCATC
CAAAAAAAAATTAAAAAAAGGTAATTTGGGTGCCCGGGCCTTTTATTGAG
AAAAACAAAGGCAGGGGGGCCATCTCCCTCAAAGGATGTGAAGGAAATAT
TAAAGCCGCAAGGAACATATAAGAAAAGGGGTTCTGGAAAGGATGACAAA
TAATTTCGTGTAGCATCGAGATTCAGGAATAATTTAAAGGAAAAAGAAAA
ATGATAAGAAAAAAAAACATCACTCTGTCATTGGCAGCAAAAGAAAGAAC
AAC
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