DY305501

Overview
NameDY305501
Unique NameDY305501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_NICSY (Photosystem I assembly protein ycf4 OS=Nicotiana sylvestris GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.664e-37
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRSE+IW+E I GSRK  NF WAFILFLGSL FL+VG SSYL RNL+S FP QQI FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MTWRSEHIWIELITGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRNLISFFPPQQIIFFPQGLVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CUCSA (Photosystem I assembly protein ycf4 OS=Cucumis sativus GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.664e-37
Identity = 76/112 (67.86%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRSE IW+EF+ GSRK  NF WAFILFLGSL FL+VG SSYL R+L+SLFPSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+  + IF WGFPGK
Sbjct:    1 MNWRSERIWIEFLRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLISLFPSQQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_WHEAT (Photosystem I assembly protein ycf4 OS=Triticum aestivum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE+IWVE + GSRK GNFFWA ILFLGSL FL VGISSYL +N++S+ PSQ+I FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHIWVELLKGSRKRGNFFWACILFLGSLGFLSVGISSYLGKNIISILPSQEILFFPQGVVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGIK 113
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_PIPCE (Photosystem I assembly protein ycf4 OS=Piper cenocladum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 77/111 (69.37%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            M+ RSE IW+EFI GSRK  NF WA IL LGSL FL+VGISSYL RNL+SLFPSQQINFFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG
Sbjct:    1 MNRRSERIWIEFIMGSRKTSNFCWACILLLGSLGFLLVGISSYLGRNLISLFPSQQINFFPQGIVMSFYGIAGLFISSYLWSTILWNIGSGYDRFDRKEGIVCIFRWGFPG 111
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_AEGSP (Photosystem I assembly protein ycf4 OS=Aegilops speltoides GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE+IWVE + GSRK GNFFWA ILFLGSL FL VGISSYL +N++S+ PSQ+I FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHIWVELLKGSRKRGNFFWACILFLGSLGFLSVGISSYLGKNIISILPSQEILFFPQGVVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGIK 113
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_AEGCR (Photosystem I assembly protein ycf4 OS=Aegilops crassa GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.649e-36
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE+IWVE + GSRK GNFFWA ILFLGSL FL VGISSYL +N++S+ PSQ+I FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHIWVELLKGSRKRGNFFWACILFLGSLGFLSVGISSYLGKNIISILPSQEILFFPQGVVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGIK 113
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SORBI (Photosystem I assembly protein ycf4 OS=Sorghum bicolor GN=ycf4 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.153e-36
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE+IW+E + GSRK GNFFWA ILFLGSL FL VG SSYL +N++SL PSQQI FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHIWIELLKGSRKRGNFFWACILFLGSLGFLAVGASSYLGKNMISLLPSQQILFFPQGVVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGIK 113
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_DIOEL (Photosystem I assembly protein ycf4 OS=Dioscorea elephantipes GN=ycf4 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.812e-36
Identity = 75/111 (67.57%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            M+WRSE+IW+E I GSRK  NF WA ILFLGSL FL+VG SSYL RNL+S+FPSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG
Sbjct:    1 MNWRSEHIWIELITGSRKTSNFCWACILFLGSLGFLVVGTSSYLGRNLISVFPSQQIIFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPG 111
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CALFG (Photosystem I assembly protein ycf4 OS=Calycanthus floridus var. glaucus GN=ycf4 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.812e-36
Identity = 76/111 (68.47%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            M+WRSE IW+E I GSRK  NF WA ILFLGSL FL+VG SSYL RNL+SLFPSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG
Sbjct:    1 MNWRSERIWIELITGSRKTSNFCWACILFLGSLGFLLVGTSSYLGRNLISLFPSQQIIFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPG 111
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_ARAHI (Photosystem I assembly protein ycf4 OS=Arabis hirsuta GN=ycf4 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.812e-36
Identity = 76/112 (67.86%), Postives = 85/112 (75.89%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+EFI GSRK  NF WAFILFLGSL FL+VG SSYL RN +S+F SQQI FFPQGIV SFYGIAGLFI+ YLW T      +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSESIWIEFITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNFISVFASQQIIFFPQGIVMSFYGIAGLFISCYLWCTFLWNVGSGYDLFDRKEGIVRIFRWGFPGK 112
The following BLAST results are available for this feature:
BLAST of DY305501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
YCF4_NICSY9.664e-3766.96Photosystem I assembly protein ycf4 OS=Nicotiana s... [more]
YCF4_CUCSA9.664e-3767.86Photosystem I assembly protein ycf4 OS=Cucumis sat... [more]
YCF4_WHEAT1.649e-3665.49Photosystem I assembly protein ycf4 OS=Triticum ae... [more]
YCF4_PIPCE1.649e-3669.37Photosystem I assembly protein ycf4 OS=Piper cenoc... [more]
YCF4_AEGSP1.649e-3665.49Photosystem I assembly protein ycf4 OS=Aegilops sp... [more]
YCF4_AEGCR1.649e-3665.49Photosystem I assembly protein ycf4 OS=Aegilops cr... [more]
YCF4_SORBI2.153e-3665.49Photosystem I assembly protein ycf4 OS=Sorghum bic... [more]
YCF4_DIOEL2.812e-3667.57Photosystem I assembly protein ycf4 OS=Dioscorea e... [more]
YCF4_CALFG2.812e-3668.47Photosystem I assembly protein ycf4 OS=Calycanthus... [more]
YCF4_ARAHI2.812e-3667.86Photosystem I assembly protein ycf4 OS=Arabis hirs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AH07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305501 ID=DY305501; Name=DY305501; organism=Citrus sinensis; type=EST; length=1253bp
GTAGAATATGAATTCTAATTATTATAGGATATCCTTATACCAATAACAGG
TACAAATATTAAATCGAGGTACCCTTTCTATGACAATTCTCAACAGCTTT
CCCTCTATTTTTGTGCCTTTAGTGGGCCTAGTATTTCCGGCAATGGCAAT
GGCTTCGTTATTTCTTTATCTTGAAAAAAATAAGATTTTGTAAATCCGAT
CGGATCAAGGTCAAATCTCGTCTAGTTTTTTTCAAGACTTAGCGATGACG
GATATCCATTTAGTAGAATAGTGTATAAGACTAAGAGGCGGCTTTCCCCG
AACATAAACGAAGAGCTCTTATGCATGTGTAAACATGATATATAGGTACA
TAAATTCTATCTATTTTGAACAAGAGGCTGTGATCCGAACTCATGTCTGC
AATGAAAGTCAATGGTACCAATCTACAGGGACTTATATGAAGGGGATACT
CTTATTTTATTCTACCTCACCAATTCGATGAATTATTGCTAAGAGCTCAC
GTCCAAATAGTACTAGTTGATGAGAGTTACTTCGGAAATACAAAAAGTAA
ACTAAAATGGATTTGGTTTTGGTTATTTCCCCAATTCCAATAAAATGCAA
CTGGAGCTAGTATGTATGAGTTGGCGATCAGAATATATATGGGTAGAATT
TATAGCGGGCTCTCGCAAACCAGGCAATTTCTTCTGGGCCTTTATCCTTT
TTTTAGGCTCATTANGATTCTTAATGGTTGGAATTTCTAGTTATCTTGAT
AGGAATTTGCTATCTTTATTTCCGTCGCAGCAAATCAATTTTTTTCCACA
AGGGATCGTGAGGTCTTTCTACGGGATCGCGGGTCTCTTTATTAATTCCT
ATTTGTGGGGCACATTATAAGGAAGGTGGGTAACGGGTAATAATCCATTT
AGAACCAAAAAGGGAAAAATGGGAATTTTTCTTTGGGGATTTCCTGGAAA
AAAACCACCGCAGCTCAGAGACATTCCTTTGGAAAAAAATTCCTGCCATC
CAAAAAAAAATTAAAAAAAGGTAATTTGGGTGCCCGGGCCTTTTATTGAG
AAAAACAAAGGCAGGGGGGCCATCTCCCTCAAAGGATGTGAAGGAAATAT
TAAAGCCGCAAGGAACATATAAGAAAAGGGGTTCTGGAAAGGATGACAAA
TAATTTCGTGTAGCATCGAGATTCAGGAATAATTTAAAGGAAAAAGAAAA
ATGATAAGAAAAAAAAACATCACTCTGTCATTGGCAGCAAAAGAAAGAAC
AAC
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