DY305501

Overview
NameDY305501
Unique NameDY305501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_LOLPR (Photosystem I assembly protein ycf4 OS=Lolium perenne GN=ycf4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.672e-36
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE++WVE + GSRK GNFFWA ILFLGSL FL VG SSYL +N++S+ PSQQI FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHVWVELLKGSRKRGNFFWACILFLGSLGFLSVGASSYLGKNIISILPSQQILFFPQGVVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGIK 113
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_DRIGR (Photosystem I assembly protein ycf4 OS=Drimys granadensis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.672e-36
Identity = 76/111 (68.47%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            M+WRSE IW+E I GSRK  NF WA ILFLGSL FL+VG SSYL RNL+SLFPSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG
Sbjct:    1 MNWRSERIWIELITGSRKISNFCWACILFLGSLGFLLVGTSSYLGRNLISLFPSQQIIFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGVVCIFRWGFPG 111
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_COFAR (Photosystem I assembly protein ycf4 OS=Coffea arabica GN=ycf4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.672e-36
Identity = 78/114 (68.42%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGN--NPFRTKKGKMGIFLWGFPGK 951
            MS RSE+IW+E I GSRK  NF WAFILF+GS+ FL+VGISSYL RNL+S FPSQQI FFPQGIV SFYGIAGLFI+SYLW T+   W  GN  + F  K+G + IF WGFPGK
Sbjct:    1 MSLRSEHIWIELIKGSRKISNFCWAFILFVGSVGFLLVGISSYLGRNLISFFPSQQIVFFPQGIVMSFYGIAGLFISSYLWCTI--SWNVGNGYDRFDRKEGIVCIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_AGRST (Photosystem I assembly protein ycf4 OS=Agrostis stolonifera GN=ycf4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.672e-36
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE++WVE + GSRK GNFFWA ILFLGSL FL VG SSYL +N++S+ PSQQI FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHVWVELLKGSRKRGNFFWACILFLGSLGFLSVGASSYLGKNIISILPSQQILFFPQGVVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGIK 113
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SACOF (Photosystem I assembly protein ycf4 OS=Saccharum officinarum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.796e-36
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE+IW+E + GSRK GNFFWA ILFLGSL FL VG SSYL +N++S+ PSQQI FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHIWIELLKGSRKRGNFFWACILFLGSLGFLAVGASSYLGKNMISVLPSQQILFFPQGVVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGIK 113
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SACHY (Photosystem I assembly protein ycf4 OS=Saccharum hybrid GN=ycf4 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.796e-36
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE+IW+E + GSRK GNFFWA ILFLGSL FL VG SSYL +N++S+ PSQQI FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHIWIELLKGSRKRGNFFWACILFLGSLGFLAVGASSYLGKNMISVLPSQQILFFPQGVVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGIK 113
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_MAIZE (Photosystem I assembly protein ycf4 OS=Zea mays GN=ycf4 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.796e-36
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE+IW+E + GSRK GNFFWA ILFLGSL FL VG SSYL +N++S+ PSQQI FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHIWIELLKGSRKRGNFFWACILFLGSLGFLAVGASSYLGKNMISVLPSQQILFFPQGVVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGIK 113
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_ILLOL (Photosystem I assembly protein ycf4 OS=Illicium oligandrum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.796e-36
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            M+WRSE IW+E I GSRK  NF WA ILFLGS+ FL+VGISSYL RNL+SLFPSQQI FFPQGIV  FYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG
Sbjct:    1 MNWRSERIWIELITGSRKTSNFCWACILFLGSIGFLLVGISSYLGRNLISLFPSQQILFFPQGIVMCFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPG 111
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CUSEX (Photosystem I assembly protein ycf4 OS=Cuscuta exaltata GN=ycf4 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.796e-36
Identity = 75/111 (67.57%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            MSWRSE+IW+E IAGSRK  N  WAFILFLGSL F +VG SSYL RNL+S FP QQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG
Sbjct:    1 MSWRSEHIWIELIAGSRKISNLCWAFILFLGSLGFFLVGTSSYLGRNLISFFPLQQIIFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDLFNRKEGIVCIFRWGFPG 111
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_ORYSJ (Photosystem I assembly protein ycf4 OS=Oryza sativa subsp. japonica GN=ycf4 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.181e-36
Identity = 72/113 (63.72%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE+IW+E + GSRK GNFFWA ILFLGSL FL VG SSYL +N++S+ PSQQI FFPQG+V SFYGIAGLFI++YLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHIWIELLKGSRKRGNFFWACILFLGSLGFLAVGASSYLGKNIISVLPSQQILFFPQGVVMSFYGIAGLFISAYLWCTILWNVGSGYDRFDRKEGVVCIFRWGFPGIK 113
The following BLAST results are available for this feature:
BLAST of DY305501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
YCF4_LOLPR3.672e-3664.60Photosystem I assembly protein ycf4 OS=Lolium pere... [more]
YCF4_DRIGR3.672e-3668.47Photosystem I assembly protein ycf4 OS=Drimys gran... [more]
YCF4_COFAR3.672e-3668.42Photosystem I assembly protein ycf4 OS=Coffea arab... [more]
YCF4_AGRST3.672e-3664.60Photosystem I assembly protein ycf4 OS=Agrostis st... [more]
YCF4_SACOF4.796e-3664.60Photosystem I assembly protein ycf4 OS=Saccharum o... [more]
YCF4_SACHY4.796e-3664.60Photosystem I assembly protein ycf4 OS=Saccharum h... [more]
YCF4_MAIZE4.796e-3664.60Photosystem I assembly protein ycf4 OS=Zea mays GN... [more]
YCF4_ILLOL4.796e-3667.57Photosystem I assembly protein ycf4 OS=Illicium ol... [more]
YCF4_CUSEX4.796e-3667.57Photosystem I assembly protein ycf4 OS=Cuscuta exa... [more]
YCF4_ORYSJ8.181e-3663.72Photosystem I assembly protein ycf4 OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AH07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305501 ID=DY305501; Name=DY305501; organism=Citrus sinensis; type=EST; length=1253bp
GTAGAATATGAATTCTAATTATTATAGGATATCCTTATACCAATAACAGG
TACAAATATTAAATCGAGGTACCCTTTCTATGACAATTCTCAACAGCTTT
CCCTCTATTTTTGTGCCTTTAGTGGGCCTAGTATTTCCGGCAATGGCAAT
GGCTTCGTTATTTCTTTATCTTGAAAAAAATAAGATTTTGTAAATCCGAT
CGGATCAAGGTCAAATCTCGTCTAGTTTTTTTCAAGACTTAGCGATGACG
GATATCCATTTAGTAGAATAGTGTATAAGACTAAGAGGCGGCTTTCCCCG
AACATAAACGAAGAGCTCTTATGCATGTGTAAACATGATATATAGGTACA
TAAATTCTATCTATTTTGAACAAGAGGCTGTGATCCGAACTCATGTCTGC
AATGAAAGTCAATGGTACCAATCTACAGGGACTTATATGAAGGGGATACT
CTTATTTTATTCTACCTCACCAATTCGATGAATTATTGCTAAGAGCTCAC
GTCCAAATAGTACTAGTTGATGAGAGTTACTTCGGAAATACAAAAAGTAA
ACTAAAATGGATTTGGTTTTGGTTATTTCCCCAATTCCAATAAAATGCAA
CTGGAGCTAGTATGTATGAGTTGGCGATCAGAATATATATGGGTAGAATT
TATAGCGGGCTCTCGCAAACCAGGCAATTTCTTCTGGGCCTTTATCCTTT
TTTTAGGCTCATTANGATTCTTAATGGTTGGAATTTCTAGTTATCTTGAT
AGGAATTTGCTATCTTTATTTCCGTCGCAGCAAATCAATTTTTTTCCACA
AGGGATCGTGAGGTCTTTCTACGGGATCGCGGGTCTCTTTATTAATTCCT
ATTTGTGGGGCACATTATAAGGAAGGTGGGTAACGGGTAATAATCCATTT
AGAACCAAAAAGGGAAAAATGGGAATTTTTCTTTGGGGATTTCCTGGAAA
AAAACCACCGCAGCTCAGAGACATTCCTTTGGAAAAAAATTCCTGCCATC
CAAAAAAAAATTAAAAAAAGGTAATTTGGGTGCCCGGGCCTTTTATTGAG
AAAAACAAAGGCAGGGGGGCCATCTCCCTCAAAGGATGTGAAGGAAATAT
TAAAGCCGCAAGGAACATATAAGAAAAGGGGTTCTGGAAAGGATGACAAA
TAATTTCGTGTAGCATCGAGATTCAGGAATAATTTAAAGGAAAAAGAAAA
ATGATAAGAAAAAAAAACATCACTCTGTCATTGGCAGCAAAAGAAAGAAC
AAC
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