DY305501

Overview
NameDY305501
Unique NameDY305501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SOLLC (Photosystem I assembly protein ycf4 OS=Solanum lycopersicum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.396e-35
Identity = 75/112 (66.96%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRS+ IW+E I GSRK  NF WA ILFLGSL FL+VG SSYL RNLLS FP QQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MTWRSDDIWIELITGSRKISNFCWALILFLGSLGFLLVGTSSYLGRNLLSFFPPQQIIFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_SOLBU (Photosystem I assembly protein ycf4 OS=Solanum bulbocastanum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.396e-35
Identity = 75/112 (66.96%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRS+ IW+E I GSRK  NF WA ILFLGSL FL+VG SSYL RNLLS FP QQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MTWRSDDIWIELITGSRKISNFCWALILFLGSLGFLLVGTSSYLGRNLLSFFPPQQIIFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_HORVU (Photosystem I assembly protein ycf4 OS=Hordeum vulgare GN=ycf4 PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.396e-35
Identity = 72/113 (63.72%), Postives = 88/113 (77.88%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE+IWVE + GSRK  NFFWA ILFLGSL FL+VG SSYL +N++S+ PSQ+I FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG K
Sbjct:    1 MNWRSEHIWVELLKGSRKRSNFFWACILFLGSLGFLLVGTSSYLGKNIISILPSQEILFFPQGVVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGIK 113          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_EUCGG (Photosystem I assembly protein ycf4 OS=Eucalyptus globulus subsp. globulus GN=ycf4 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.396e-35
Identity = 84/167 (50.30%), Postives = 111/167 (66.47%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPP-----QLRDIPLEKNSCHPKKN*KKVIWVPGPFIEKNKGRGAISLKGCEGNI 1101
            MS RSE+IW+E I GSRK  NF WAFILFLGSL F++VG SSYL +NL+SL PSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK        +++DI   +       + ++V+++      + KG+GA+ L   + N+
Sbjct:    1 MSCRSEHIWIELIVGSRKISNFCWAFILFLGSLGFVLVGSSSYLGKNLISLVPSQQILFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFRMKDIQSIRIEVKEGISARRVLYM------EIKGQGAVPLTRTDENL 161          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_OENEH (Photosystem I assembly protein ycf4 OS=Oenothera elata subsp. hookeri GN=ycf4 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.823e-35
Identity = 85/165 (51.52%), Postives = 108/165 (65.45%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPLE---KNSCHPKKN*KKVIWVPGPFIEKNKGRGAISLKGCEGNI 1101
            M WRSE+IW+E I GSRK  NF WAF+LFLGSL F++VG SSYL +NL+SL  SQQI+FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK     R I L    K+    +   K+ I+       + KG+GAI L   + N+
Sbjct:    1 MIWRSEHIWIELIVGSRKISNFCWAFLLFLGSLGFVLVGTSSYLGKNLISLVSSQQIHFFPQGLVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKN----RRIFLRFRMKDIQSIRIEVKEGIYARRVLYMEIKGQGAIPLTRSDDNL 161          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CHLSC (Photosystem I assembly protein ycf4 OS=Chloranthus spicatus GN=ycf4 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 74/111 (66.67%), Postives = 85/111 (76.58%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            M+WRSE IW+E I GSRK  NF WA ILFLGSL FL+VG SSYL +NL+SL PSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG
Sbjct:    1 MNWRSERIWIELITGSRKTSNFCWACILFLGSLGFLLVGTSSYLGKNLISLLPSQQILFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPG 111          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_LACSA (Photosystem I assembly protein ycf4 OS=Lactuca sativa GN=ycf4 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.926e-35
Identity = 75/112 (66.96%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MS RSE+IW+E I G+RK  NF WA ILFLGSL FL+VG SSYL RNL+SLFPSQ+I FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K G + IF WGFPGK
Sbjct:    1 MSCRSEHIWIEPITGARKTSNFCWAVILFLGSLGFLLVGTSSYLGRNLISLFPSQEIVFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKDGIVCIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_HELAN (Photosystem I assembly protein ycf4 OS=Helianthus annuus GN=ycf4 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.926e-35
Identity = 75/112 (66.96%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MS RSE+IW+E I G+RK  NF WA ILFLGSL FL+VG SSYL RNL+SLFPSQ+I FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K G + IF WGFPGK
Sbjct:    1 MSCRSEHIWIEPIKGARKTSNFCWAIILFLGSLGFLLVGTSSYLGRNLISLFPSQEIVFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDIKDGIVCIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_PELHO (Photosystem I assembly protein ycf4 OS=Pelargonium hortorum GN=ycf4-A PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.543e-34
Identity = 73/112 (65.18%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MS RSE +W+E IAGSRK  NF WA ILFLGS  FL+VG SSYL RN +SLFPSQQI FFPQG+V SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG+
Sbjct:    1 MSCRSENLWLELIAGSRKTSNFLWALILFLGSFAFLLVGTSSYLGRNWISLFPSQQILFFPQGVVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGR 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_DAUCA (Photosystem I assembly protein ycf4 OS=Daucus carota GN=ycf4 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.543e-34
Identity = 74/112 (66.07%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MS RSE+IW++ I GSRK  N  WA ILFLGSL FL+VG SSYL RNL+SLFPSQQI FFPQGIV SFYGIAGLFI+SYLW T+      G + F  K+G + +F WGFPGK
Sbjct:    1 MSCRSEHIWIQPITGSRKTSNLCWAIILFLGSLGFLLVGTSSYLGRNLISLFPSQQILFFPQGIVMSFYGIAGLFISSYLWCTISWNVGGGYDRFDRKEGMVCLFRWGFPGK 112          
The following BLAST results are available for this feature:
BLAST of DY305501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
YCF4_SOLLC1.396e-3566.96Photosystem I assembly protein ycf4 OS=Solanum lyc... [more]
YCF4_SOLBU1.396e-3566.96Photosystem I assembly protein ycf4 OS=Solanum bul... [more]
YCF4_HORVU1.396e-3563.72Photosystem I assembly protein ycf4 OS=Hordeum vul... [more]
YCF4_EUCGG1.396e-3550.30Photosystem I assembly protein ycf4 OS=Eucalyptus ... [more]
YCF4_OENEH1.823e-3551.52Photosystem I assembly protein ycf4 OS=Oenothera e... [more]
YCF4_CHLSC3.109e-3566.67Photosystem I assembly protein ycf4 OS=Chloranthus... [more]
YCF4_LACSA6.926e-3566.96Photosystem I assembly protein ycf4 OS=Lactuca sat... [more]
YCF4_HELAN6.926e-3566.96Photosystem I assembly protein ycf4 OS=Helianthus ... [more]
YCF4_PELHO1.543e-3465.18Photosystem I assembly protein ycf4 OS=Pelargonium... [more]
YCF4_DAUCA1.543e-3466.07Photosystem I assembly protein ycf4 OS=Daucus caro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AH07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305501 ID=DY305501; Name=DY305501; organism=Citrus sinensis; type=EST; length=1253bp
GTAGAATATGAATTCTAATTATTATAGGATATCCTTATACCAATAACAGG
TACAAATATTAAATCGAGGTACCCTTTCTATGACAATTCTCAACAGCTTT
CCCTCTATTTTTGTGCCTTTAGTGGGCCTAGTATTTCCGGCAATGGCAAT
GGCTTCGTTATTTCTTTATCTTGAAAAAAATAAGATTTTGTAAATCCGAT
CGGATCAAGGTCAAATCTCGTCTAGTTTTTTTCAAGACTTAGCGATGACG
GATATCCATTTAGTAGAATAGTGTATAAGACTAAGAGGCGGCTTTCCCCG
AACATAAACGAAGAGCTCTTATGCATGTGTAAACATGATATATAGGTACA
TAAATTCTATCTATTTTGAACAAGAGGCTGTGATCCGAACTCATGTCTGC
AATGAAAGTCAATGGTACCAATCTACAGGGACTTATATGAAGGGGATACT
CTTATTTTATTCTACCTCACCAATTCGATGAATTATTGCTAAGAGCTCAC
GTCCAAATAGTACTAGTTGATGAGAGTTACTTCGGAAATACAAAAAGTAA
ACTAAAATGGATTTGGTTTTGGTTATTTCCCCAATTCCAATAAAATGCAA
CTGGAGCTAGTATGTATGAGTTGGCGATCAGAATATATATGGGTAGAATT
TATAGCGGGCTCTCGCAAACCAGGCAATTTCTTCTGGGCCTTTATCCTTT
TTTTAGGCTCATTANGATTCTTAATGGTTGGAATTTCTAGTTATCTTGAT
AGGAATTTGCTATCTTTATTTCCGTCGCAGCAAATCAATTTTTTTCCACA
AGGGATCGTGAGGTCTTTCTACGGGATCGCGGGTCTCTTTATTAATTCCT
ATTTGTGGGGCACATTATAAGGAAGGTGGGTAACGGGTAATAATCCATTT
AGAACCAAAAAGGGAAAAATGGGAATTTTTCTTTGGGGATTTCCTGGAAA
AAAACCACCGCAGCTCAGAGACATTCCTTTGGAAAAAAATTCCTGCCATC
CAAAAAAAAATTAAAAAAAGGTAATTTGGGTGCCCGGGCCTTTTATTGAG
AAAAACAAAGGCAGGGGGGCCATCTCCCTCAAAGGATGTGAAGGAAATAT
TAAAGCCGCAAGGAACATATAAGAAAAGGGGTTCTGGAAAGGATGACAAA
TAATTTCGTGTAGCATCGAGATTCAGGAATAATTTAAAGGAAAAAGAAAA
ATGATAAGAAAAAAAAACATCACTCTGTCATTGGCAGCAAAAGAAAGAAC
AAC
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