DY305501

Overview
NameDY305501
Unique NameDY305501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_JASNU (Photosystem I assembly protein ycf4 OS=Jasminum nudiflorum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.015e-34
Identity = 73/112 (65.18%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+E + GSRK  NF WA ILFLGSL FL+VG SSYL RN +S  PSQQ  FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSEDIWIELLTGSRKLSNFCWALILFLGSLGFLLVGTSSYLGRNWISFVPSQQFIFFPQGIVMSFYGIAGLFISSYLWCTISWNIGSGYDRFDRKEGIVCIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CUSRE (Photosystem I assembly protein ycf4 OS=Cuscuta reflexa GN=ycf4 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.489e-34
Identity = 71/111 (63.96%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            MSWRSE+IW++ I GSRK  N  WAF LFLGSL F++VG  SYL RNL+S FP QQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPG
Sbjct:    1 MSWRSEHIWIDLITGSRKISNLCWAFTLFLGSLGFVLVGTYSYLGRNLISFFPLQQIIFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDLFNRKEGIVCIFRWGFPG 111          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_AEGTA (Photosystem I assembly protein ycf4 OS=Aegilops tauschii GN=ycf4 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.228e-33
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGN--NPFRTKKGKMGIFLWGFPGKK 954
            M+WRSE+IWVE + GSRK GNFFWA ILFLGSL FL VGISSYL +N++S+ PSQ+I FFPQG+V SFYGIAGLFI+SYL  T+   W  G+  + F  K+G + IF W FPG K
Sbjct:    1 MNWRSEHIWVELLKGSRKRGNFFWACILFLGSLGFLSVGISSYLGKNIISILPSQEILFFPQGVVMSFYGIAGLFISSYLCCTI--LWNVGSDYDRFDRKEGIVCIFRWEFPGIK 113          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_PINTH (Photosystem I assembly protein ycf4 OS=Pinus thunbergii GN=ycf4 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.646e-31
Identity = 68/111 (61.26%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            M+ RS+++W+E I GSRK  NFFWA ILFLGSL F +VGISSY   NL+ L  SQQI F PQGIV  FYGIAGLFI+SYLW T+     +G N F  KKG + +F WGFPG
Sbjct:    1 MNRRSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGENLIPLLSSQQILFVPQGIVMCFYGIAGLFISSYLWCTILFNVGSGYNKFDKKKGIVCLFRWGFPG 111          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_PINKO (Photosystem I assembly protein ycf4 OS=Pinus koraiensis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.646e-31
Identity = 68/111 (61.26%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPG 948
            M+ RS+++W+E I GSRK  NFFWA ILFLGSL F +VGISSY   NL+ L  SQQI F PQGIV  FYGIAGLFI+SYLW T+     +G N F  KKG + +F WGFPG
Sbjct:    1 MNRRSKWLWIEPITGSRKRSNFFWACILFLGSLGFFLVGISSYFGENLIPLLSSQQILFVPQGIVMCFYGIAGLFISSYLWCTILFNVGSGYNKFDKKKGIVCLFRWGFPG 111          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CYCTA (Photosystem I assembly protein ycf4 OS=Cycas taitungensis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.348e-29
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRSE++W+E I GSR+  NF  A ILF GSL F +VGISSYL +NL+ +  SQQI F PQGIV  FYGIAGLFI+SYLW T+     +G + F  ++G + +F WGFPG+
Sbjct:    1 MNWRSEWLWIEPITGSRRTSNFCRACILFFGSLGFFLVGISSYLGKNLIPVLSSQQILFVPQGIVMCFYGIAGLFISSYLWCTILWNVGSGYDKFDEEEGIVCLFRWGFPGR 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_WELMI (Photosystem I assembly protein ycf4 OS=Welwitschia mirabilis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.547e-26
Identity = 64/123 (52.03%), Postives = 80/123 (65.04%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGKKPPQLRDIPLE 984
            M+ +S+ +W+E I GSR+  NFF+A ILF G+L F +VG SSYL RNLL L  SQQI F PQGIV  FYGIAGLF +SYLW T+     +G N    K G + +F WGFPG+        PL+
Sbjct:    1 MNNQSKRLWIEPIQGSRRKSNFFFASILFGGALGFFLVGFSSYLGRNLLPLLSSQQIIFVPQGIVMCFYGIAGLFFSSYLWCTIFFNVGSGYNQIDEKTGIVCLFRWGFPGRNRRIFLRFPLK 123          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_STAPU (Photosystem I assembly protein ycf4 OS=Staurastrum punctulatum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.547e-26
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M  +SE++W+E + GSR+  N FWA ++ LG+L F++VG+SSYL+++++S  PSQ I F PQG+V  FYGI G F++ YLW  +     +G N F   +G + IF WGFPGK
Sbjct:    1 MDTKSEFLWIEKVVGSRRFSNVFWALVVLLGALGFILVGLSSYLNKDIISFLPSQSITFTPQGLVMCFYGIGGFFLSLYLWFAILWDVGSGYNEFDRCEGVISIFRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_ANTFO (Photosystem I assembly protein ycf4 OS=Anthoceros formosae GN=ycf4 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.547e-26
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+W SE+  +E I GSR+  NFFWAFIL  G+L FL VG+SSY  ++L+S    +QI F PQGIV  FYGIAG   + YLWGT+     +G N F   KG + I+ WGFPGK
Sbjct:    1 MNWESEWFRIELIRGSRRISNFFWAFILLSGALGFLSVGLSSYFGKDLISFLSYEQIVFIPQGIVMCFYGIAGSAFSLYLWGTIFWNIGSGYNKFDKGKGIVCIYRWGFPGK 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_MARPO (Photosystem I assembly protein ycf4 OS=Marchantia polymorpha GN=ycf4 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.500e-26
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+ + ++I V+FI GSR+  NF WAFIL  G+L F  VG SSYL ++L+    ++QI F PQGIV  FYGIAGLFI+ YLW T+     +G N F  +KG   IF WGFPGK
Sbjct:    1 MNLQVDHIRVDFIIGSRRISNFCWAFILLFGALGFFFVGFSSYLQKDLIPFLSAEQILFIPQGIVMCFYGIAGLFISFYLWCTICWNVGSGYNKFDKQKGIFSIFRWGFPGK 112          
The following BLAST results are available for this feature:
BLAST of DY305501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
YCF4_JASNU2.015e-3465.18Photosystem I assembly protein ycf4 OS=Jasminum nu... [more]
YCF4_CUSRE4.489e-3463.96Photosystem I assembly protein ycf4 OS=Cuscuta ref... [more]
YCF4_AEGTA2.228e-3363.48Photosystem I assembly protein ycf4 OS=Aegilops ta... [more]
YCF4_PINTH4.646e-3161.26Photosystem I assembly protein ycf4 OS=Pinus thunb... [more]
YCF4_PINKO4.646e-3161.26Photosystem I assembly protein ycf4 OS=Pinus korai... [more]
YCF4_CYCTA4.348e-2956.25Photosystem I assembly protein ycf4 OS=Cycas taitu... [more]
YCF4_WELMI1.547e-2652.03Photosystem I assembly protein ycf4 OS=Welwitschia... [more]
YCF4_STAPU1.547e-2647.32Photosystem I assembly protein ycf4 OS=Staurastrum... [more]
YCF4_ANTFO1.547e-2652.68Photosystem I assembly protein ycf4 OS=Anthoceros ... [more]
YCF4_MARPO4.500e-2652.68Photosystem I assembly protein ycf4 OS=Marchantia ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AH07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305501 ID=DY305501; Name=DY305501; organism=Citrus sinensis; type=EST; length=1253bp
GTAGAATATGAATTCTAATTATTATAGGATATCCTTATACCAATAACAGG
TACAAATATTAAATCGAGGTACCCTTTCTATGACAATTCTCAACAGCTTT
CCCTCTATTTTTGTGCCTTTAGTGGGCCTAGTATTTCCGGCAATGGCAAT
GGCTTCGTTATTTCTTTATCTTGAAAAAAATAAGATTTTGTAAATCCGAT
CGGATCAAGGTCAAATCTCGTCTAGTTTTTTTCAAGACTTAGCGATGACG
GATATCCATTTAGTAGAATAGTGTATAAGACTAAGAGGCGGCTTTCCCCG
AACATAAACGAAGAGCTCTTATGCATGTGTAAACATGATATATAGGTACA
TAAATTCTATCTATTTTGAACAAGAGGCTGTGATCCGAACTCATGTCTGC
AATGAAAGTCAATGGTACCAATCTACAGGGACTTATATGAAGGGGATACT
CTTATTTTATTCTACCTCACCAATTCGATGAATTATTGCTAAGAGCTCAC
GTCCAAATAGTACTAGTTGATGAGAGTTACTTCGGAAATACAAAAAGTAA
ACTAAAATGGATTTGGTTTTGGTTATTTCCCCAATTCCAATAAAATGCAA
CTGGAGCTAGTATGTATGAGTTGGCGATCAGAATATATATGGGTAGAATT
TATAGCGGGCTCTCGCAAACCAGGCAATTTCTTCTGGGCCTTTATCCTTT
TTTTAGGCTCATTANGATTCTTAATGGTTGGAATTTCTAGTTATCTTGAT
AGGAATTTGCTATCTTTATTTCCGTCGCAGCAAATCAATTTTTTTCCACA
AGGGATCGTGAGGTCTTTCTACGGGATCGCGGGTCTCTTTATTAATTCCT
ATTTGTGGGGCACATTATAAGGAAGGTGGGTAACGGGTAATAATCCATTT
AGAACCAAAAAGGGAAAAATGGGAATTTTTCTTTGGGGATTTCCTGGAAA
AAAACCACCGCAGCTCAGAGACATTCCTTTGGAAAAAAATTCCTGCCATC
CAAAAAAAAATTAAAAAAAGGTAATTTGGGTGCCCGGGCCTTTTATTGAG
AAAAACAAAGGCAGGGGGGCCATCTCCCTCAAAGGATGTGAAGGAAATAT
TAAAGCCGCAAGGAACATATAAGAAAAGGGGTTCTGGAAAGGATGACAAA
TAATTTCGTGTAGCATCGAGATTCAGGAATAATTTAAAGGAAAAAGAAAA
ATGATAAGAAAAAAAAACATCACTCTGTCATTGGCAGCAAAAGAAAGAAC
AAC
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