DY305501

Overview
NameDY305501
Unique NameDY305501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CHAGL (Photosystem I assembly protein ycf4 OS=Chaetosphaeridium globosum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.002e-25
Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+ +SE+  V+FI G+R+  N+FWA ++FLGSL F +VG+SSYL +N++    +  I F PQGIV  FYGIAGLF++ YLW T+     +G N F  KKG + IF WG+PG+
Sbjct:    1 MNIKSEFFRVDFIIGARRLSNYFWATVVFLGSLGFFIVGVSSYLQKNIVFFLSASDILFTPQGIVMCFYGIAGLFLSFYLWFTIFLDIGSGYNEFDKKKGIISIFRWGYPGQ 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_HUPLU (Photosystem I assembly protein ycf4 OS=Huperzia lucidula GN=ycf4 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.309e-25
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+W+SE++ VE I GSR+  NF WA I  LG+L F +VGI SYL ++L+ + PSQQI F PQGIV  FYGIAGLF + YLW T+     +G N F  ++G + +F WGFPG+
Sbjct:    1 MNWQSEWLRVEPIMGSRRISNFCWACITSLGALGFFLVGIPSYLGKDLIPVLPSQQIVFVPQGIVMCFYGIAGLFPSFYLWCTILWNVGSGYNIFDKREGIICLFRWGFPGE 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_PSINU (Photosystem I assembly protein ycf4 OS=Psilotum nudum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.710e-25
Identity = 64/114 (56.14%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGN--NPFRTKKGKMGIFLWGFPGK 951
            M  +SE+I VE I G+R+  NFFWAFIL LG+L FL+VG SSYL R+L+ L PSQQI F PQGIV  FYGIAG+ I  YL   +   W  GN  N F  ++G + IF WGFPG+
Sbjct:    1 MKRQSEWIRVESIRGARRISNFFWAFILILGALGFLLVGSSSYLGRDLIPLLPSQQIVFIPQGIVMCFYGIAGISIGFYLGFAI--SWDIGNGYNLFDKQRGIVRIFRWGFPGE 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_PHYPA (Photosystem I assembly protein ycf4 OS=Physcomitrella patens GN=ycf4 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.233e-25
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+  S+++WVE I GSR+  NF WA IL  G+L F  VGISSY  ++L+    SQQI F PQG+V  FYGIAGLF++ YLW T+     +G N F  KK  + +F WGFPG+
Sbjct:    1 MNRESDWLWVEPIMGSRRVSNFCWAAILLFGALGFFFVGISSYFGKDLIPFLSSQQILFVPQGVVMCFYGIAGLFLSFYLWCTIFWNVGSGYNKFDKKKKIVSLFRWGFPGE 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_ANGEV (Photosystem I assembly protein ycf4 OS=Angiopteris evecta GN=ycf4 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.498e-25
Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+++SE++ ++ I GSR+  N  WAFIL LG++ F +VG SSYL R+L+ +  SQQI F PQGIV  FYGIAG+F+  YLW T+     +G N F  ++G + +F WGFPG+
Sbjct:    1 MNYQSEWLRIDPIKGSRRFSNLCWAFILVLGAIGFSLVGFSSYLGRDLIPILSSQQIIFLPQGIVMCFYGIAGIFLGFYLWCTILWNVGSGYNQFNKREGIVYLFRWGFPGE 112          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CUSOB (Photosystem I assembly protein ycf4 OS=Cuscuta obtusiflora GN=ycf4 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.108e-24
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+E I GSR+  NF WAFILF GSL F++VG +SYL +NL++        FFPQG+V +FYGI+GLFI+ YL   L      G + F   +G + IF W FPG+
Sbjct:    1 MSWRSEQIWIELIPGSRRESNFLWAFILFFGSLEFILVGTASYLRQNLIA--------FFPQGMVMTFYGISGLFISLYLLSMLFWNVGGGYHQFDKTRGVICIFRWVFPGR 104          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CUSGR (Photosystem I assembly protein ycf4 OS=Cuscuta gronovii GN=ycf4 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.469e-24
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+E I GSR+  NF WAFILF GSL F++VG +SY  +NL++        FFPQG+V  FYGI+GLFI+ YL   L      G N F   +G + IF W FPG+
Sbjct:    1 MSWRSEQIWIELIPGSRRGSNFVWAFILFFGSLEFILVGTASYFSQNLIA--------FFPQGMVMIFYGISGLFISLYLSSMLFWNVGGGYNQFDKTRGVICIFRWVFPGR 104          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_STIHE (Photosystem I assembly protein ycf4 OS=Stigeoclonium helveticum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.355e-22
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  652 IAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            I GSR+  N++WA ++FLG++ FL  G+SSY  +NLL     Q I FFPQG+V SFYGI GL ++ YLW T+      G N F  K G + IF WGFPGK
Sbjct:   12 ITGSRRLSNYWWASVVFLGAIGFLFTGLSSYFGQNLLPFLQVQNITFFPQGLVMSFYGILGLLLSIYLWLTIIWNVGGGFNEFNKKAGAIRIFRWGFPGK 111          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_LOTJA (Photosystem I assembly protein ycf4 OS=Lotus japonicus GN=ycf4 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.018e-22
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  619 SWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSL----FPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            +W+SE + V+F+ G R P +FFWAFI  LGS+ FL+V  SSYL +N LS     F S+ I F PQG   + YG AGLF++ +LW T+     +G + F  K+G + IF +GFPGK
Sbjct:    8 TWQSEEVRVDFVTGCRNPRDFFWAFITLLGSVGFLLVAASSYLHKNFLSFISSEFDSELIRFLPQGATITVYGTAGLFVSLFLWLTIFWNVGSGYDLFDKKRGIVCIFRYGFPGK 122          
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CHAVU (Photosystem I assembly protein ycf4 OS=Chara vulgaris GN=ycf4 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.163e-20
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  625 RSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            +S+   +E I GSRK  N+FW+F +F G+  FL+VGI SYL + L   F ++ I F PQG V  FYGIAG+F++ YLW T+     +G N F   +G + IF WGFPG+
Sbjct:    7 KSQVFRLEPIIGSRKYINYFWSFSIFFGAFGFLIVGICSYLKKELF-FFSAENIIFIPQGAVMCFYGIAGIFLSFYLWFTMILGVGSGFNEFNKNEGIVNIFRWGFPGQ 114          
The following BLAST results are available for this feature:
BLAST of DY305501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
YCF4_CHAGL1.002e-2550.00Photosystem I assembly protein ycf4 OS=Chaetosphae... [more]
YCF4_HUPLU1.309e-2552.68Photosystem I assembly protein ycf4 OS=Huperzia lu... [more]
YCF4_PSINU1.710e-2556.14Photosystem I assembly protein ycf4 OS=Psilotum nu... [more]
YCF4_PHYPA2.233e-2550.89Photosystem I assembly protein ycf4 OS=Physcomitre... [more]
YCF4_ANGEV6.498e-2549.11Photosystem I assembly protein ycf4 OS=Angiopteris... [more]
YCF4_CUSOB1.108e-2451.79Photosystem I assembly protein ycf4 OS=Cuscuta obt... [more]
YCF4_CUSGR2.469e-2451.79Photosystem I assembly protein ycf4 OS=Cuscuta gro... [more]
YCF4_STIHE1.355e-2251.00Photosystem I assembly protein ycf4 OS=Stigeocloni... [more]
YCF4_LOTJA3.018e-2246.96Photosystem I assembly protein ycf4 OS=Lotus japon... [more]
YCF4_CHAVU2.163e-2046.79Photosystem I assembly protein ycf4 OS=Chara vulga... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AH07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305501 ID=DY305501; Name=DY305501; organism=Citrus sinensis; type=EST; length=1253bp
GTAGAATATGAATTCTAATTATTATAGGATATCCTTATACCAATAACAGG
TACAAATATTAAATCGAGGTACCCTTTCTATGACAATTCTCAACAGCTTT
CCCTCTATTTTTGTGCCTTTAGTGGGCCTAGTATTTCCGGCAATGGCAAT
GGCTTCGTTATTTCTTTATCTTGAAAAAAATAAGATTTTGTAAATCCGAT
CGGATCAAGGTCAAATCTCGTCTAGTTTTTTTCAAGACTTAGCGATGACG
GATATCCATTTAGTAGAATAGTGTATAAGACTAAGAGGCGGCTTTCCCCG
AACATAAACGAAGAGCTCTTATGCATGTGTAAACATGATATATAGGTACA
TAAATTCTATCTATTTTGAACAAGAGGCTGTGATCCGAACTCATGTCTGC
AATGAAAGTCAATGGTACCAATCTACAGGGACTTATATGAAGGGGATACT
CTTATTTTATTCTACCTCACCAATTCGATGAATTATTGCTAAGAGCTCAC
GTCCAAATAGTACTAGTTGATGAGAGTTACTTCGGAAATACAAAAAGTAA
ACTAAAATGGATTTGGTTTTGGTTATTTCCCCAATTCCAATAAAATGCAA
CTGGAGCTAGTATGTATGAGTTGGCGATCAGAATATATATGGGTAGAATT
TATAGCGGGCTCTCGCAAACCAGGCAATTTCTTCTGGGCCTTTATCCTTT
TTTTAGGCTCATTANGATTCTTAATGGTTGGAATTTCTAGTTATCTTGAT
AGGAATTTGCTATCTTTATTTCCGTCGCAGCAAATCAATTTTTTTCCACA
AGGGATCGTGAGGTCTTTCTACGGGATCGCGGGTCTCTTTATTAATTCCT
ATTTGTGGGGCACATTATAAGGAAGGTGGGTAACGGGTAATAATCCATTT
AGAACCAAAAAGGGAAAAATGGGAATTTTTCTTTGGGGATTTCCTGGAAA
AAAACCACCGCAGCTCAGAGACATTCCTTTGGAAAAAAATTCCTGCCATC
CAAAAAAAAATTAAAAAAAGGTAATTTGGGTGCCCGGGCCTTTTATTGAG
AAAAACAAAGGCAGGGGGGCCATCTCCCTCAAAGGATGTGAAGGAAATAT
TAAAGCCGCAAGGAACATATAAGAAAAGGGGTTCTGGAAAGGATGACAAA
TAATTTCGTGTAGCATCGAGATTCAGGAATAATTTAAAGGAAAAAGAAAA
ATGATAAGAAAAAAAAACATCACTCTGTCATTGGCAGCAAAAGAAAGAAC
AAC
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