DY305496

Overview
NameDY305496
Unique NameDY305496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1285
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: PHNC1_ROSDO (Phosphonates import ATP-binding protein phnC 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=phnC1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.247e-11
Identity = 65/187 (34.76%), Postives = 91/187 (48.66%), Query Frame = 2
Query:  182 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXX---SLMGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSL----VADS-GDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII---RKELAACTIINI 706
            LK + L I  G+ + ++G +G+GKSTLI+   RLVEPS              S   L   R R G+I QE  L E  TV  N+   G+      W+S  R   +  V      LD +    +AD   D  S GQRQ + + R +++   LL +DE TAS+D +T  +I R+I    +E     IINI
Sbjct:   18 LKEVDLEIPQGQVLALIGPSGAGKSTLIRCVNRLVEPSSGKVYLGNVELTGLSSSALRRERRRMGMIFQEYALVERLTVMENVLS-GRLGYVGFWRSFMRRFPQADVDEAFRLLDRVGLAHMADKRADELSGGQRQRVGICRALIQDPALLLVDEPTASLDPKTSRQIMRLICELCRERGLAAIINI 203          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: Y014_MYCGE (Putative ABC transporter ATP-binding protein MG014 OS=Mycoplasma genitalium GN=MG014 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.240e-11
Identity = 52/188 (27.66%), Postives = 89/188 (47.34%), Query Frame = 2
Query:  182 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVV--AAK-----------PDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINI 706
            L+ ++      +  G+VG TGSGKS +  +   L EP+             +    L    GI+ Q+ +LF+GT+ SNI  IG  +  + WK+    Q  + +  AAK            D  D  V   G N S GQ+Q +++ R ++   R+L  D++ +++D+ T+ +++  I  +L   T I I
Sbjct:  383 LQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNEGEILIGGEKIQSIDSLYLSEMIGIVFQQNILFKGTISSNI-KIGIETRSD-WKNQSDLQKNEAMKNAAKIACADTFIEKFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDSMSALDALTEKKVRENIENDLKLTTKIII 568          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: SUNT_BPSPC (Sublancin-168-processing and transport ATP-binding protein sunT OS=Bacillus phage SPBc2 GN=sunT PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.240e-11
Identity = 43/180 (23.89%), Postives = 84/180 (46.67%), Query Frame = 2
Query:  179 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHRD 718
            +++ I L +   +K+ ++G +G+GKST  +   +L +             +      +R R   I + P LF+GT++ N+     +   EI  +    Q  + +     +    ++++G N S GQ+Q L+L R +L   ++L +DE+ +++D      I   + +    C II I H D
Sbjct:  498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHR--MDCLIILITHND 675          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: SUNT_BACSU (SPBc2 prophage-derived sublancin-168-processing and transport ATP-binding protein sunT OS=Bacillus subtilis GN=sunT PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.240e-11
Identity = 43/180 (23.89%), Postives = 84/180 (46.67%), Query Frame = 2
Query:  179 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHRD 718
            +++ I L +   +K+ ++G +G+GKST  +   +L +             +      +R R   I + P LF+GT++ N+     +   EI  +    Q  + +     +    ++++G N S GQ+Q L+L R +L   ++L +DE+ +++D      I   + +    C II I H D
Sbjct:  498 IVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETLHR--MDCLIILITHND 675          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: PHNC_DESVH (Phosphonates import ATP-binding protein phnC OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=phnC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.240e-11
Identity = 60/202 (29.70%), Postives = 97/202 (48.02%), Query Frame = 2
Query:  104 PPNWPAHGNVDLIDLQVRYRS-NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLM---GLHDLRSRFGIIPQEPVLFEG-TVRSNI--DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSL-VAD----SGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 673
            P    AHG+  L+   +R        VLK I+ ++ G     ++G +G+GKSTL++   RL+EP+             +    L + R R G++ QE  L E  +V  N+    +G  S    W  L +   +D+  A  D LD + +AD      D  S GQRQ + + R +++   +L  DE T+S+D +T  EI  ++R
Sbjct:    7 PKKAGAHGDKSLVVEHLRKEYVRGKAVLKDISFTVSGQSTTAIIGPSGTGKSTLLRCINRLIEPTAGRILVSGEDVCALKGTALREARRRIGMVFQEYNLVERLSVMENVLCGRLGYISPWRAW--LRKFPQEDIDRAF-DLLDMVGLADFARARADELSGGQRQRVGIARAVMQEPHILLADEPTSSLDPKTSVEIMELLR 205          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: PHNC_BORPA (Phosphonates import ATP-binding protein phnC OS=Bordetella parapertussis GN=phnC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.240e-11
Identity = 59/191 (30.89%), Postives = 89/191 (46.60%), Query Frame = 2
Query:  158 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSL-------MGLHDLRSRFGIIPQEPVLFEG-TVRSNI--DPIGQYSDEEIW------KSLERC-QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKE 679
            YR+  P VL GI L I G     ++G +G+GKSTL++   RL+EP+           ++         L   R R G++ QE  L E  TV  N+    +G  S    W        +ER  QL D V      L        D  S GQRQ + + R +++  +LL  DE T+S+D +T  EI +++ ++
Sbjct:   14 YRAGKP-VLNGIDLDIAGQGLTAIIGPSGTGKSTLLRCINRLIEPTSGEIVLKDAEGTVDLARVRGQSLRRARRRIGMVFQEYNLVERLTVMENLLTGRLGYTSALNAWMRRFDPADIERAFQLLDTVG-----LAGFADQRADALSGGQRQRVGIARALMQRPQLLLADEPTSSLDPKTSVEIMKLLTEQ 198          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: MACB_BORA1 (Macrolide export ATP-binding/permease protein macB OS=Bordetella avium (strain 197N) GN=macB PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.240e-11
Identity = 55/191 (28.80%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  179 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDL----RSRFGIIPQE-PVLFEGTVRSNIDPIGQYS-------DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRK-ELAACTIINIPH 712
            VL+ + LSI  GE + +VG +GSGKSTL+ +   L  PS           + M   +L    R  FG I Q   +L + + ++N++    Y+        E     L R  L + +  +P +L           S GQ+Q +S+ R ++   R++  DE T ++D+QT  E+ RI+++   A  TI+ + H
Sbjct:   24 VLREVNLSIQAGEMVAIVGASGSGKSTLMNILGCLDRPSRGGYRVDGRETARMDPDELAELRREHFGFIFQRYHLLADLSAQANVEMPAVYAGMASGPRHERAAALLRRLGLSERLDYRPGQL-----------SGGQQQRVSIARALMNGGRIILADEPTGALDTQTGQEVLRILKELNAAGHTIVLVTH 203          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: PHNC_BORBR (Phosphonates import ATP-binding protein phnC OS=Bordetella bronchiseptica GN=phnC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.233e-11
Identity = 59/191 (30.89%), Postives = 88/191 (46.07%), Query Frame = 2
Query:  158 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSL-------MGLHDLRSRFGIIPQEPVLFEG-TVRSNI--DPIGQYSDEEIW------KSLERC-QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKE 679
            YR+  P VL GI L I G     ++G +G+GKSTL++   RL+EP+           ++         L   R R G++ QE  L E  TV  N+    +G  S    W        +ER  QL D V      L        D  S GQRQ + + R +++  +LL  DE T+S+D +T  EI  ++ ++
Sbjct:   14 YRAGKP-VLNGIDLDIAGQGLTAIIGPSGTGKSTLLRCINRLIEPTSGEIVLKDAEGTVDLARVRGQSLRRARRRIGMVFQEYNLVERLTVMENLLTGRLGYTSALNAWMRRFDPADIERAFQLLDTVG-----LAGFADQRADALSGGQRQRVGIARALMQRPQLLLADEPTSSLDPKTSVEIMELLTEQ 198          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: MACB_PSE14 (Macrolide export ATP-binding/permease protein macB OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=macB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.446e-11
Identity = 60/197 (30.46%), Postives = 97/197 (49.24%), Query Frame = 2
Query:  137 LIDLQVRYRS----NTPLV--LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDL----RSRFGIIPQEPVLF-EGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDK--LDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAA 688
            LIDL+   +S    ++PLV  L+GI LSIH GE + +VG +GSGKSTL+ +   L  P+           + +G  +L    R  FG + Q   L   G+ + N++    Y+     +   R       AA  D+  L S   +     S GQ+Q +S+ R ++    ++  DE T ++DS + AE+  ++  ELA+
Sbjct:    5 LIDLRAIRKSYGGGDSPLVNVLRGIDLSIHAGEFVAIVGASGSGKSTLMNILGCLDRPTSGEYLFAGENVAELGSDELAWLRREAFGFVFQGYHLIPSGSAQENVEMPAIYAGTPAAERHAR------AAALLDRLGLGSRTGNRPHQLSGGQQQRVSIARALMNGGHIILADEPTGALDSHSGAEVMALL-DELAS 194          
The following BLAST results are available for this feature:
BLAST of DY305496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 469
Match NameE-valueIdentityDescription
PHNC1_ROSDO3.247e-1134.76Phosphonates import ATP-binding protein phnC 1 OS=... [more]
Y014_MYCGE4.240e-1127.66Putative ABC transporter ATP-binding protein MG014... [more]
SUNT_BPSPC4.240e-1123.89Sublancin-168-processing and transport ATP-binding... [more]
SUNT_BACSU4.240e-1123.89SPBc2 prophage-derived sublancin-168-processing an... [more]
PHNC_DESVH4.240e-1129.70Phosphonates import ATP-binding protein phnC OS=De... [more]
PHNC_BORPA4.240e-1130.89Phosphonates import ATP-binding protein phnC OS=Bo... [more]
MACB_BORA14.240e-1128.80Macrolide export ATP-binding/permease protein macB... [more]
PHNC_BORBR7.233e-1130.89Phosphonates import ATP-binding protein phnC OS=Bo... [more]
MACB_PSE149.446e-1130.46Macrolide export ATP-binding/permease protein macB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AG10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305496 ID=DY305496; Name=DY305496; organism=Citrus sinensis; type=EST; length=1285bp
GATGAGTTGCTTTGTGGAAAACCGGATGGTCTCTGTTGAAAGGATAAAGC
AGTTTACAGAAATTCCTTCAGAAGCAGCATGGAAGATGGAAGATCGTCTT
CCACCTCCAAATTGGCCTGCTCATGGCAATGTGGACCTCATAGACTTGCA
GGTCAGATATCGCTCCAACACTCCTCTGGTTCTCAAAGGTATTACACTCA
GCATTCACGGGGGAGAGAAGATTGGTGTAGTTGGGCGTACAGGAAGTGGG
AAGTCAACTTTAATTCAAGTTTTCTTTAGGCTGGTGGAGCCTTCAGGAGG
GAGAATCATTATTGATGGAATCGACATTTCATTAATGGGGCTTCATGACC
TAAGGTCTCGCTTTGGGATCATTCCTCAAGAACCTGTCCTTTTTGAAGGA
ACTGTGAGAAGCAACATTGATCCAATTGGTCAGTATTCAGATGAAGAAAT
CTGGAAGAGCCTCGAGCGATGTCAACTTAAAGATGTGGTAGCTGCAAAGC
CTGATAAACTCGATTCTTTAGTGGCCGATAGTGGTGACAACTGGAGCGTG
GGACAAAGGCAGCTTCTTAGTCTGGGAAGGGTTATGCTAAAGCACAGCCG
GCTCTTGTTTATGGATGAGGCGACGGCTTCTGTTGATTCACAAACTGATG
CTGAAATTCAAAGGATCATTCGAAAAGAGTTAGCTGCCTGTACAATTATC
AACATTCCTCACAGGGATACCCACAGTCATGGATTGTGATAGAATTTATA
GTTGTTGAAGCAGGAAGGGCCAAAAAAATTTTACCNGCCGTCCCGGTGGT
TTGTGGGGCCTTCCTCCTTTGGGGCTTTTGTGGTGGCGGTCCCCGGCGGT
TTGGCGAAAGGGGGGGAACGAAGCCTTGTTGGTGGTTGTGGGTTGAGAGA
AGTTACCGGGAGTGAGGTCCAGGTGATTTAAGGAACAACCAGTGACGGGC
GAGAAAGAATAAAGTTGCCCGCCACCAAAATTGAGGGGTGGGGAGATGCC
TCTTGAAAATGGCCGCGGGAAGGATAAATGGAAGAGGGCGCGGGGCTTAG
AGCCAAGGTGAAGAGGATAATAGCACCGGCAAGACGGAACAAAAGAAGGT
TGTGTGGATGATGGGGGAAGGAATAGGAGAGNGCGGGGGGAGAAGGGGGG
GGGTGGCCCCCTCCCNCCCTCCCCTCCTCCCTCCTCCCCTTCTCTTCTTT
TTCTTTTTTCTTCTCTTTCCTTCTCTCTCTTTTTTTTCTTTATATAAATA
CAAATATTACTACAATAAATCTATATAATAATTAC
back to top