DY305496

Overview
NameDY305496
Unique NameDY305496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1285
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: ABCC6_DICDI (ABC transporter C family member 6 OS=Dictyostelium discoideum GN=abcC6 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.909e-44
Identity = 94/246 (38.21%), Postives = 149/246 (60.57%), Query Frame = 2
Query:   14 VENRMVSVERIKQFTEIPSEAAWKMEDRLPPP-----------NWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDN-WSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHR 715
            +E +M S +RI+ + EIP E    +                  NWP  G ++  +++++YR N+   LK ++  +   EKIG+VGRTG+GK+T+    FR+VE S           S + L  LRS  GI+PQ+P +F GT+RSNIDP  +++D EIW+S+E+ +LKD + + P KL++ + ++GDN +S GQ+QLL L R +LK+ +++ MDEAT+S+D  T   I++ I++    CT + I HR
Sbjct: 1051 LEVKMNSFQRIQSYIEIPKEGNKLVSTNSNEVDNHTIKDADLVNWPNKGIIEFKNVEIKYRPNSEPNLKDLSFKVQSSEKIGIVGRTGAGKTTIASSLFRMVECSKGLILIDGIDISKVQLQKLRSSIGIVPQDPFIFTGTIRSNIDPFNEFTDFEIWESVEKVKLKDAINSMPLKLETALQENGDNGFSYGQKQLLCLCRTILKNFKIILMDEATSSIDYHTAQLIKQTIQENFKDCTTLTIAHR 1296          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: ABCCF_DICDI (ABC transporter C family member 15 OS=Dictyostelium discoideum GN=abcC15 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.800e-44
Identity = 89/234 (38.03%), Postives = 147/234 (62.82%), Query Frame = 2
Query:   14 VENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPH 712
            +E+R+ SVER++ +  IP E     ++ +     WP+ G ++  ++++RYR N+   L+  ++ I+  E+IG++GR+GSGKST+    FR++E S           S + L  LRS  GI+PQ+P +F G++R N+DP  Q++D EIW++L + +LK +V+  P KL+SLV   GD  ++G +QLL L R +L++S+++  DEAT S+D QT   I++ I +    CTI+ I H
Sbjct: 1153 LESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLV-QGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAH 1385          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: ABCC9_RABIT (ATP-binding cassette transporter sub-family C member 9 OS=Oryctolagus cuniculus GN=ABCC9 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.800e-44
Identity = 94/235 (40.00%), Postives = 144/235 (61.28%), Query Frame = 2
Query:   14 VENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHR 715
            +E +M +V+++  F  + SE     M+    P +WP  G + + DL VRY +N   VLK +   I  G+K+G+ GRTGSGKS+L   FFR+V+             S + LH LRSR  II Q+P+LF G++R N+DP  + +D+ +W++LE  QLK++V +    LD++V + G+N+SVGQRQL  L R  ++ S +L MDEATAS+D  T+  +Q+++    A  T++ I HR
Sbjct: 1272 LEVQMGAVKKVNSFLTMESENYEGTMDPSQVPEHWPQEGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLSGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHR 1506          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: MDR_LEITA (Multidrug resistance protein OS=Leishmania tarentolae GN=PGPA PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 4.201e-43
Identity = 90/198 (45.45%), Postives = 127/198 (64.14%), Query Frame = 2
Query:  125 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKH-SRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHR 715
            G++ L  +Q+RYR   PLVL+G++  I   EK+G+VGRTGSGKSTL+  F R+VE             S  GL D+R  F +IPQ+PVLF+GTVR N+DP  + S  E+W +LE   L++ VA++ + +DS V + G N+SVGQRQL+ + R +LK  S  + MDEATA++D   D +IQ  +    +A T+I I HR
Sbjct: 1284 GSLVLEGVQMRYREGLPLVLRGVSFQIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGVIHVNGREMSAYGLRDVRRHFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKRGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHR 1481          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: ABCC1_DICDI (ABC transporter C family member 1 OS=Dictyostelium discoideum GN=abcC1 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 4.201e-43
Identity = 96/259 (37.07%), Postives = 147/259 (56.76%), Query Frame = 2
Query:   14 VENRMVSVERIKQFTEIPSEAAWKM--------------EDRLPPPN-----------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHR 715
            +E +M SVERI+ +  IP E   K+              E+     N           W   G ++  +++++Y  +    LK  TL I+  + IG+VGRTG+GKST+    FR+VE S           S +GLH+LRS  GI+PQ+P +F GT+R NIDP  +Y+D EIW +LE+ +LK  +++ P KL++++ + GD  S GQ+QLL L R +LK+S+++ MDEAT+ +D  T   I++ I      CT++ I HR
Sbjct: 1052 LEVKMNSVERIESYLNIPKEGNSKINFFRNEQQEEEEEEEEEFDFDNDDYDGFKLSKKWLTKGEIEFRNVEIKYGHSGESSLKNFTLKINQKDHIGIVGRTGAGKSTIGNGLFRMVECSKGSILIDGVDISKIGLHELRSSLGIVPQDPFIFSGTIRLNIDPFNKYTDSEIWVALEKVKLKSTISSMPLKLETMIEEGGDGLSFGQKQLLCLSRTILKNSKVVLMDEATSGIDYVTSDLIKQTINNCFKNCTMLTIAHR 1310          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: ABCC8_RAT (ATP-binding cassette transporter sub-family C member 8 OS=Rattus norvegicus GN=Abcc8 PE=1 SV=4)

HSP 1 Score: 174.866 bits (442), Expect = 9.359e-43
Identity = 94/235 (40.00%), Postives = 140/235 (59.57%), Query Frame = 2
Query:   14 VENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHR 715
            +E ++ +V+RI    +  +E+    +   L P NWP  G + + +L VRY S+   VLK +   I  G+KIG+ GRTGSGKS+    FFR+V+             + + LH LRSR  II Q+PVLF GT+R N+DP  + SD  +W++LE  QLK VV A P  LD+++ + G+N+S GQRQL  L R  ++ + +  MDEATAS+D  T+  +Q+++    A  T++ I HR
Sbjct: 1305 MEIQLGAVKRIHTLLKTEAESYEGLLAPSLIPKNWPDQGKIQIQNLSVRYDSSLKPVLKHVNALISPGQKIGICGRTGSGKSSFSLAFFRMVDMFEGRIIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPEKKCSDSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKTSIFIMDEATASIDMATENILQKVVMTAFADRTVVTIAHR 1539          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: ABCC8_HUMAN (ATP-binding cassette transporter sub-family C member 8 OS=Homo sapiens GN=ABCC8 PE=1 SV=5)

HSP 1 Score: 174.866 bits (442), Expect = 9.359e-43
Identity = 94/235 (40.00%), Postives = 140/235 (59.57%), Query Frame = 2
Query:   14 VENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHR 715
            +E ++ +V+RI    +  +E+    +   L P NWP  G + + +L VRY S+   VLK +   I  G+KIG+ GRTGSGKS+    FFR+V+             + + LH LRSR  II Q+PVLF GT+R N+DP  + SD  +W++LE  QLK VV A P  LD+++ + G+N+S GQRQL  L R  ++ + +  MDEATAS+D  T+  +Q+++    A  T++ I HR
Sbjct: 1304 MELQLGAVKRIHGLLKTEAESYEGLLAPSLIPKNWPDQGKIQIQNLSVRYDSSLKPVLKHVNALISPGQKIGICGRTGSGKSSFSLAFFRMVDTFEGHIIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPERKCSDSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKTSIFIMDEATASIDMATENILQKVVMTAFADRTVVTIAHR 1538          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: ABCC8_CRICR (ATP-binding cassette transporter sub-family C member 8 OS=Cricetus cricetus GN=ABCC8 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 9.359e-43
Identity = 94/235 (40.00%), Postives = 140/235 (59.57%), Query Frame = 2
Query:   14 VENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHR 715
            +E ++ +V+RI    +  +E+    +   L P NWP  G + + +L VRY S+   VLK +   I  G+KIG+ GRTGSGKS+    FFR+V+             + + LH LRSR  II Q+PVLF GT+R N+DP  + SD  +W++LE  QLK VV A P  LD+++ + G+N+S GQRQL  L R  ++ + +  MDEATAS+D  T+  +Q+++    A  T++ I HR
Sbjct: 1305 MEIQLGAVKRIHALLKTEAESYEGLLAPSLIPKNWPDQGKIQIQNLSVRYDSSLKPVLKHVNTLISPGQKIGICGRTGSGKSSFSLAFFRMVDMFEGRIIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPEKKCSDSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKTSIFIMDEATASIDMATENILQKVVMTAFADRTVVTIAHR 1539          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: ABCC7_DICDI (ABC transporter C family member 7 OS=Dictyostelium discoideum GN=abcC7 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 9.359e-43
Identity = 93/236 (39.41%), Postives = 140/236 (59.32%), Query Frame = 2
Query:   23 RMVSVERIKQFTEIPSEAA-----WKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHR 715
            +M SVERI+ +   P E        ++E  LP  NWP  G +   +++++YR N    LK I+  I   EKIG+VG++GSGKST +   FR++E S           S + L  LR+  GI PQEP +F GT+R NIDP G YSD EIW +LE+ +LK+ ++  P K+D+++ +   N S GQ+QLL L RV+LK  +L+F DE ++S+D  T  ++   +++ +   T + I HR
Sbjct: 1043 KMSSVERIENYINQPREGDTMNVDMELESNLPI-NWPQKGEIQFKNVEIKYRPNLKPSLKNISFDIKSNEKIGIVGKSGSGKSTTMLALFRMIECSKGSIHIDGIDISKISLSKLRNSIGICPQEPFIFSGTIRKNIDPFGIYSDSEIWLALEKVKLKETISLLPMKIDTIIHEQA-NLSFGQKQLLCLTRVLLKSPKLVFFDEHSSSIDYFTAHQLNISVKENITNSTTLTIAHR 1276          
BLAST of DY305496 vs. ExPASy Swiss-Prot
Match: AB13C_ARATH (ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 6.066e-42
Identity = 91/233 (39.06%), Postives = 136/233 (58.37%), Query Frame = 2
Query:   17 ENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXSLMGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLSLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRKELAACTIINIPHR 715
            E  MVSVER+ Q+ ++P E     +       WP HG V+  ++ +RY S  P  L  I+ +I GG  +GV+GRTG+GKS+++   FRL               S + + +LRS   ++PQ P LF+G++R N+DP+G   D  IW+ L++C++K  V +    LDS V +SG ++SVGQRQLL L R +LK S++L +DE TA++D  T + +   I  E    T+I I HR
Sbjct:  922 EKEMVSVERVLQYMDVPQEEVSGPQSL--SDKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVKAAVES-VGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISSECKGVTVITIAHR 1151          
The following BLAST results are available for this feature:
BLAST of DY305496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 469
Match NameE-valueIdentityDescription
ABCC6_DICDI2.909e-4438.21ABC transporter C family member 6 OS=Dictyostelium... [more]
ABCCF_DICDI3.800e-4438.03ABC transporter C family member 15 OS=Dictyosteliu... [more]
ABCC9_RABIT3.800e-4440.00ATP-binding cassette transporter sub-family C memb... [more]
MDR_LEITA4.201e-4345.45Multidrug resistance protein OS=Leishmania tarento... [more]
ABCC1_DICDI4.201e-4337.07ABC transporter C family member 1 OS=Dictyostelium... [more]
ABCC8_RAT9.359e-4340.00ATP-binding cassette transporter sub-family C memb... [more]
ABCC8_HUMAN9.359e-4340.00ATP-binding cassette transporter sub-family C memb... [more]
ABCC8_CRICR9.359e-4340.00ATP-binding cassette transporter sub-family C memb... [more]
ABCC7_DICDI9.359e-4339.41ABC transporter C family member 7 OS=Dictyostelium... [more]
AB13C_ARATH6.066e-4239.06ABC transporter C family member 13 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AG10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305496 ID=DY305496; Name=DY305496; organism=Citrus sinensis; type=EST; length=1285bp
GATGAGTTGCTTTGTGGAAAACCGGATGGTCTCTGTTGAAAGGATAAAGC
AGTTTACAGAAATTCCTTCAGAAGCAGCATGGAAGATGGAAGATCGTCTT
CCACCTCCAAATTGGCCTGCTCATGGCAATGTGGACCTCATAGACTTGCA
GGTCAGATATCGCTCCAACACTCCTCTGGTTCTCAAAGGTATTACACTCA
GCATTCACGGGGGAGAGAAGATTGGTGTAGTTGGGCGTACAGGAAGTGGG
AAGTCAACTTTAATTCAAGTTTTCTTTAGGCTGGTGGAGCCTTCAGGAGG
GAGAATCATTATTGATGGAATCGACATTTCATTAATGGGGCTTCATGACC
TAAGGTCTCGCTTTGGGATCATTCCTCAAGAACCTGTCCTTTTTGAAGGA
ACTGTGAGAAGCAACATTGATCCAATTGGTCAGTATTCAGATGAAGAAAT
CTGGAAGAGCCTCGAGCGATGTCAACTTAAAGATGTGGTAGCTGCAAAGC
CTGATAAACTCGATTCTTTAGTGGCCGATAGTGGTGACAACTGGAGCGTG
GGACAAAGGCAGCTTCTTAGTCTGGGAAGGGTTATGCTAAAGCACAGCCG
GCTCTTGTTTATGGATGAGGCGACGGCTTCTGTTGATTCACAAACTGATG
CTGAAATTCAAAGGATCATTCGAAAAGAGTTAGCTGCCTGTACAATTATC
AACATTCCTCACAGGGATACCCACAGTCATGGATTGTGATAGAATTTATA
GTTGTTGAAGCAGGAAGGGCCAAAAAAATTTTACCNGCCGTCCCGGTGGT
TTGTGGGGCCTTCCTCCTTTGGGGCTTTTGTGGTGGCGGTCCCCGGCGGT
TTGGCGAAAGGGGGGGAACGAAGCCTTGTTGGTGGTTGTGGGTTGAGAGA
AGTTACCGGGAGTGAGGTCCAGGTGATTTAAGGAACAACCAGTGACGGGC
GAGAAAGAATAAAGTTGCCCGCCACCAAAATTGAGGGGTGGGGAGATGCC
TCTTGAAAATGGCCGCGGGAAGGATAAATGGAAGAGGGCGCGGGGCTTAG
AGCCAAGGTGAAGAGGATAATAGCACCGGCAAGACGGAACAAAAGAAGGT
TGTGTGGATGATGGGGGAAGGAATAGGAGAGNGCGGGGGGAGAAGGGGGG
GGGTGGCCCCCTCCCNCCCTCCCCTCCTCCCTCCTCCCCTTCTCTTCTTT
TTCTTTTTTCTTCTCTTTCCTTCTCTCTCTTTTTTTTCTTTATATAAATA
CAAATATTACTACAATAAATCTATATAATAATTAC
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