DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.904e-57
Identity = 114/198 (57.58%), Postives = 148/198 (74.75%), Query Frame = 2
Query:  272 VLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            V +L  + KRE G K   ANI+A++AV+DI+RTTLGP+SMLKMLLD  GGIV+TNDGNAILRE+DVAHPAAKSMIEL+R QDEEVGDGTTSVI+LAGE+L   E F++++ HPTVI  AY +ALE+ V + +     ID  +   +  +V SCIGTKF+S++G+LI DLA+ A  +V    G  + E+D+K+  KV K
Sbjct:    7 VFILNQNAKREQGRKAQTANIKAARAVSDIVRTTLGPKSMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELARAQDEEVGDGTTSVIILAGEILSAVESFLERDIHPTVIVGAYFQALEEIVRLTESYGEPIDIENENDLQKIVSSCIGTKFSSKWGNLIVDLAVKAVKSVYKKEGDYV-EIDVKRYAKVEK 203          

HSP 2 Score: 23.0978 bits (48), Expect = 7.904e-57
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  855 KLEKVPGGPLENS 893
            K+EK+PGG LE S
Sbjct:  200 KVEKIPGGLLEES 212          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 7.118e-56
Identity = 114/211 (54.03%), Postives = 148/211 (70.14%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV------------GVDLGQGLREVDIKKCIKVGK 865
            P++VL    +R +G +    NIQA++AVADIIR+TLGPRSMLKMLLD  GGIV+TNDGN ILRE+DV+HP AKSMIELSR  DEEVGDGTTSVI+LAGEML  AE F+  N HPT+I R YN AL++A+ + ++ A+ +D +D   +  LV+SCIG KF+S++ D++ D+A+ A  TV              D+     EVDIK+  KV K
Sbjct:    8 PIMVLNSKTQRSTGRQAQLGNIQAARAVADIIRSTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVSHPTAKSMIELSRAHDEEVGDGTTSVIILAGEMLINAEPFVRTNIHPTIIVRGYNYALQEALTICEEWALVVDVHDSERVKSLVQSCIGAKFSSRWNDIMIDMALKAVLTVSRESRTPSFTPEANDVYAQKMEVDIKRYAKVEK 218          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.220e-54
Identity = 109/208 (52.40%), Postives = 152/208 (73.08%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEML-HVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLR-----EVDIKKCIKVGK 865
            M +PV+ +  S +R +G +   +NI A+KAVAD+IRT LGP++MLKMLLD  GG+V+TNDG+AILRE+DVAHPAAKSM+ELSRTQDEEVGDGTT+VI+LAGE+L   A   I+KN HP +I +A  KAL DA+ V+ +++  +D  + A M  L+++ IGTK+   + + + +LA+DA  TV  DLGQ +      E+DIK+ ++V K
Sbjct:    1 MQAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEK 208          

HSP 2 Score: 26.1794 bits (56), Expect = 1.220e-54
Identity = 22/86 (25.58%), Postives = 43/86 (50.00%), Query Frame = 3
Query:  840 LRSALKLEKVPGGPLENSKGS*RIYVPQKSFLPLEKWEKKIVNPRFYPLLIPPLYIKKRKKINTLADFGLKRKTWGNPVLKWEKKK 1097
            ++  +++EK+PGG + +S+    + + +    P  K  + I NPR   L  P  Y K   + N   +   K + W N +L+ E+++
Sbjct:  200 IKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHP--KMSRHIENPRVVLLDCPLEYKKGESQTNIEIE---KEEDW-NRILQIEEEQ 279          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 2.532e-53
Identity = 107/202 (52.97%), Postives = 145/202 (71.78%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            M+ PV VL  + KRE+  +       A K+VA II+T LGP++MLKM+LD  G  VVTNDGNAILRE+DV HPAAKSMIELSR QDE VGDGTTSV++LA E+L  +E FI+K  HP  I +A+  AL+D+++++D+ ++AID  +R  +L +V+SCIGTKF  ++G L+ +LA+DA  TV +    G  E+DIK+  KV K
Sbjct:    1 MNQPVFVLNTNAKRENQKEAQQGIFLAVKSVASIIKTCLGPKAMLKMILDPMGTTVVTNDGNAILREIDVTHPAAKSMIELSRAQDENVGDGTTSVVILAAEVLASSELFIEKKIHPHYIIKAFRMALDDSLSIVDQYSVAIDLKNRPEVLKVVQSCIGTKFIGKWGSLMCNLALDAVMTVHIQEEDGRSEIDIKRYAKVEK 202          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.702e-41
Identity = 83/183 (45.36%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  254 TIMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            T+  +PVL+LK+  +R  G      NI A++ +A+ +++TLGP+ M KML+D+ G +V+TNDG  IL+E+DV HPAAK +IE+++TQD EVGDGTT+ +VLAGE+L  AEE +D++ HPTVI R Y  A   AV +L+ IAM ID  D  T+  +  + I  K +    D ++ L ++A   V
Sbjct:    3 TLQGTPVLILKEGTQRTVGRDAQRMNIMAARVIAEAVKSTLGPKGMDKMLVDSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKKAEELLDQDIHPTVIARGYRMAANKAVEILESIAMDIDVEDEETLKKIAATAITGKHSEYALDHLSSLVVEAVKRV 185          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.441e-40
Identity = 82/193 (42.49%), Postives = 131/193 (67.88%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKF--TSQFGDLIADLAIDATTTVGVDLGQGLREVDI 841
            PVL+LK+  +R  G +   ANI A++ +A++++++LGPR + KML+DA G I VTNDG  I++E+++ HPAAK ++E+++ QD EVGDGTTSV+VLAG +L  AE+ +D+N HPT+I   Y KA+E+A+ ++D+ A+ ++  D + +  + ++ + +KF  T    D I  + IDA  TV      G  EVD+
Sbjct:    7 PVLILKEGTQRTYGREALRANILAARVLAEMLKSSLGPRGLDKMLVDAFGDITVTNDGATIVKEMEIQHPAAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDENLHPTIIIEGYTKAMEEALRLVDEAAVPVEVEDDSVLRRIAETTLASKFVGTGPERDKIISMVIDAIRTVAEKRPDGGYEVDL 199          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.210e-40
Identity = 87/216 (40.28%), Postives = 135/216 (62.50%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVG--------VDL---------GQGLREVDIKKCIKVGK 865
            PV++L +  +R  G      NI A++ +A+ +RTTLGP+ M KML+D+ G IVVTNDG  IL ++D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L  AEE +D+N HP++I + Y  A E A  +LD+IA+ +D +D  T+L +  + I  K      +L+A LA++A   V         VDL         G+G+ E ++ + + + K
Sbjct:    8 PVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDK 223          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.210e-40
Identity = 87/216 (40.28%), Postives = 135/216 (62.50%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVG--------VDL---------GQGLREVDIKKCIKVGK 865
            PV++L +  +R  G      NI A++ +A+ +RTTLGP+ M KML+D+ G IVVTNDG  IL ++D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L  AEE +D+N HP++I + Y  A E A  +LD+IA+ +D +D  T+L +  + I  K      +L+A LA++A   V         VDL         G+G+ E ++ + + + K
Sbjct:    8 PVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDK 223          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.220e-39
Identity = 86/216 (39.81%), Postives = 135/216 (62.50%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVG--------VDL---------GQGLREVDIKKCIKVGK 865
            PV++L +  +R  G      NI A++ +A+ +RTTLGP+ M KML+D+ G IVVTNDG  IL ++D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L  AEE +D+N HP++I + Y  A E A  +L++IA+ ++ +D  T+L +  + I  K      +L+A LA+DA   V         VDL         G+G+ E ++ + + + K
Sbjct:    8 PVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILEEIAIKVNPDDEETLLRIAMTSITGKNAESHKELLAKLAVDAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDK 223          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.593e-39
Identity = 83/194 (42.78%), Postives = 130/194 (67.01%), Query Frame = 2
Query:  257 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVD 838
            I   P+ +LK+  KRESG      NI+A+ A+++ +R++LGPR M KML+D+ G IV+TNDG  IL+E+DV HPAAK M+E+S+TQD  VGDGTT+ +++AG +L  A+  I++N HPTVI   Y  A E+A  V+D+I+  I  +++A +L + ++ + +K  S   D +A+++ +A  +V  +L  G   VD
Sbjct:    2 IAGQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSV-AELRDGKYYVD 194          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TCPG_OXYGR7.904e-5757.58T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPG_THAWE7.118e-5654.03T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPG_YEAST1.220e-5452.40T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPG_DICDI2.532e-5352.97T-complex protein 1 subunit gamma OS=Dictyostelium... [more]
THSA_ARCFU1.702e-4145.36Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THSA_AERPE1.441e-4042.49Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
THSA_THEK13.210e-4040.28Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO3.210e-4040.28Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THSA_THEK81.220e-3939.81Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSB_THEAC1.593e-3942.78Thermosome subunit beta OS=Thermoplasma acidophilu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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