DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: CH601_ROSCS (60 kDa chaperonin 1 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=groL1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.239e-12
Identity = 47/147 (31.97%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  350 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADL 778
            VAD ++TTLGPR     +    G   VT+DG  + +E+++  P     A+ ++E++   ++ VGDGTT+  VLA  +++   + +    +P +I R  +KA+E  VA L  +  AI   DRA +  +      +   S+ GDLIA++
Sbjct:   22 VADAVKTTLGPRGRNVSIDKKFGAPTVTHDGVTVAKEIELKDPFENMGARLLVEVATKTNDVVGDGTTTATVLAQSIVNEGLKMVAAGANPMLIKRGLDKAVEAVVAELKSV--AIPVRDRADIAHVAAI---SAADSEIGDLIAEV 163          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: CH60_NAUPA (60 kDa chaperonin OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.089e-11
Identity = 43/157 (27.39%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  350 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPA----AKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGV 808
            +AD +R T+GP+    +L  + G   +T DG ++ +E+++ HP     A+ + E++    +E GDGTT+  VLA  +     ++I    +P  + R  +KA+E  +A L K++  ++  ++   +    + I      + G+LIA+ A+D     GV
Sbjct:   23 LADAVRVTMGPKGRNVLLQRSFGAPHITKDGVSVAKEIELKHPVENMGAQLVKEVASKTADEAGDGTTTATVLAHAVFKEGLKYITAGANPVAVKRGMDKAVEAIIAELKKMSKTVENKEQIAQV----ATISANNDKKIGELIAE-AMDKVGKDGV 174          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: CH602_PROAC (60 kDa chaperonin 2 OS=Propionibacterium acnes GN=groL2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.974e-11
Identity = 46/164 (28.05%), Postives = 77/164 (46.95%), Query Frame = 2
Query:  350 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKS---CIGTKFTSQFGDLIAD--LAIDATTTVGVDL 814
            +AD ++ TLGP+    +L    G   +TNDG  + +E+D+  P     A+   E++   ++  GDGTT+  VLA  ++H     +    +P  + R   KA++  V  L  I+ AIDT      +  + S    IG      F  +  D  + +D + T G +L
Sbjct:   23 LADTVKVTLGPKGRYVVLDKKWGAPTITNDGVTVAKEVDLTDPYENLGAQLAKEVATKTNDVAGDGTTTATVLAQALVHEGLRAVASGANPVGLKRGIEKAVDAVVEELRSISRAIDTTSDMASVATISSRDETIGALIAEAFDKVGKDGVITVDESQTFGTEL 186          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CH601_ROSCS8.239e-1231.9760 kDa chaperonin 1 OS=Roseiflexus castenholzii (s... [more]
CH60_NAUPA4.089e-1127.3960 kDa chaperonin OS=Nautilia profundicola (strain... [more]
CH602_PROAC6.974e-1128.0560 kDa chaperonin 2 OS=Propionibacterium acnes GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
back to top