DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.081e-39
Identity = 80/177 (45.20%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  272 VLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            VL+L +  +R  G      NI A++ VA+ +RTTLGP  M KML+D  G +VVTNDG  IL E+D+ HPAAK ++E+++TQ++EVGDGTT+ +VLAGE+LH AE+ + ++ HPTVI R Y  A+E A  +L++IA  ID +D  T+  + K+ +  K   +  D +A+L + A   V
Sbjct:   11 VLILPEGYQRFVGRDAQRMNIMAARVVAETVRTTLGPMGMDKMLVDEMGDVVVTNDGVTILEEMDIEHPAAKMVVEVAKTQEDEVGDGTTTAVVLAGELLHKAEDLLQQDIHPTVIARGYRMAVEKAEEILEEIAEEIDPDDEETLKKIAKTAMTGKGVEKARDYLAELVVKAVKQV 187          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 2.717e-39
Identity = 78/184 (42.39%), Postives = 121/184 (65.76%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQ 820
            PV++L +  +R  G      NI A++ +A+ +RTTLGP+ M KML+D+ G IV+TNDG  IL E+D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L  AEE +D+N HP++I + Y  A E A  +LD+IA  +D  DR  +     + I  K   +  + +A++A++A   V   +G+
Sbjct:    8 PVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAKDVDVEDREILKKAAVTSITGKAAEEEREYLAEIAVEAVKQVAEKVGE 191          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.717e-39
Identity = 78/184 (42.39%), Postives = 121/184 (65.76%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQ 820
            PV++L +  +R  G      NI A++ +A+ +RTTLGP+ M KML+D+ G IV+TNDG  IL E+D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L  AEE +D+N HP++I + Y  A E A  +LD+IA  +D  DR  +     + I  K   +  + +A++A++A   V   +G+
Sbjct:    8 PVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAKDVDVEDREILKKAAVTSITGKAAEEEREYLAEIAVEAVKQVAEKVGE 191          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.717e-39
Identity = 87/199 (43.72%), Postives = 126/199 (63.32%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            P+LVLK+  +RE G      NI+A+KA+AD +RTTLGP+ M KML+D+ G I+++NDG  IL+E+DV HP AK ++E+S+ QD  VGDGTT+ +VL+GE+L  AE  +D+  HPTVI   Y  A+ +A  ++D+IA    + D AT+  +  + +  K T    D +ADL + A   V  ++  G   VD    IKV K
Sbjct:    7 PILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAE--KSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAV-AEVRDGKTIVDTAN-IKVDK 201          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.549e-39
Identity = 78/183 (42.62%), Postives = 119/183 (65.03%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 817
            PV++L +  +R  G      NI A++ +A+ +RTTLGP+ M KML+D+ G IV+TNDG  IL E+D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L  AEE +D+N HP++I + Y  A E A  +LD IA  +D  DR  +     + I  K   +  + +A++A++A   V   +G
Sbjct:    8 PVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDSIARDVDVEDREILKKAAMTAITGKAAEEEREYLAEIAVEAVKQVAEKVG 190          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.053e-39
Identity = 81/195 (41.54%), Postives = 123/195 (63.08%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCI 853
            P+++L +  +R SG      NI A KAVA+ +RTTLGP+ M KML+D+ G +VVTNDG  IL+E+D+ HPAA  ++E+S TQ++EVGDGTT+ ++ AGE+L  AE+ +D + H T I + Y +A E A  VL+  A+ +  +DR T+  +  + +  K      DL+++L +DA   V  D G     V I+K +
Sbjct:   10 PMIILGEDSQRTSGQDAQSMNITAGKAVAEAVRTTLGPKGMDKMLVDSGGQVVVTNDGVTILKEMDIDHPAANMIVEVSETQEDEVGDGTTTAVINAGELLDQAEDLLDSDVHATTIAQGYRQAAEKAKEVLEDNAIEVTEDDRETLTKIAATAMTGKGAESAKDLLSELVVDAVLAVKDDDGIDTNNVSIEKVV 204          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.300e-38
Identity = 80/191 (41.88%), Postives = 122/191 (63.87%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDI 841
            P+L+L +  +R  G      NI A++ +A+ +RTTLGP+ M KML+D+ G IV+TNDG  IL E+D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L  AEE +D+N HP++I + Y  A + A  +LD IA  +  +D   +L    + I  K   +  + +A LA++A   V  +   G  +VDI
Sbjct:    8 PILILPEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYTLASQKAQEILDSIAKEVKPDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAVKLVAEE-KDGKLKVDI 197          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.300e-38
Identity = 80/191 (41.88%), Postives = 122/191 (63.87%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDI 841
            P+L+L +  +R  G      NI A++ +A+ +RTTLGP+ M KML+D+ G IV+TNDG  IL E+D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L  AEE +D+N HP+++ + Y  A E A  +LD IA  +  +D   +L    + I  K   +  + +A LA++A   V  +   G  +VDI
Sbjct:    8 PILILPEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEKAQEILDSIAKEVKPDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAVKLVAEE-KDGKFKVDI 197          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.004e-38
Identity = 80/181 (44.20%), Postives = 119/181 (65.75%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVD 811
            P+LVL +   R  G      NI A K +A+ +RTTLGP+ M KML+D+ G IVVTNDG  IL+E+D+ HPAAK ++E+++TQ++EVGDGTT+ +++AGE+L  AE  ++   HPT+I   Y +A E A  +LD I  AID +DR T++ +  + +  K T +  + +A+L +DA   V  D
Sbjct:    7 PILVLPEGTSRYLGRDAQRMNILAGKILAETVRTTLGPKGMDKMLVDSLGDIVVTNDGVTILKEMDIEHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKKAENLLEMEIHPTIIAMGYRQAAEKAQEILDDI--AIDASDRDTLMKVAMTAMTGKGTEKAREPLAELIVDAVKQVEED 185          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.693e-38
Identity = 76/183 (41.53%), Postives = 120/183 (65.57%), Query Frame = 2
Query:  254 TIMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            T+   PVL+L++  +R  G      NI A++ +A+ +R+TLGP+ M KML+D+ G +V+TNDG  IL+E+DV HPAAK +IE+++TQD EVGDGTT+ +VLAGE+L  AEE +D+  HP +I   Y  A E A+ +L++IA+ I  +D   +  +  + +  K      D +A++A++A   +
Sbjct:    3 TLQGQPVLILREGTQRTVGRDAQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNEIAIPISKDDDEILKKIATTAMTGKGAEVAIDKLAEIAVNAVKMI 185          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
THS_METKA2.081e-3945.20Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THSB_THEK12.717e-3942.39Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_PYRKO2.717e-3942.39Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSA_THEAC2.717e-3943.72Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THSB_THEK83.549e-3942.62Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THS1_HALVO6.053e-3941.54Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THS_PYRHO2.300e-3841.88Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THS_PYRAB2.300e-3841.88Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSB_METTH3.004e-3844.20Thermosome subunit beta OS=Methanobacterium thermo... [more]
THSB_ARCFU6.693e-3841.53Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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