DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.491e-37
Identity = 78/183 (42.62%), Postives = 119/183 (65.03%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 817
            PV++L +  +R  G      NI A++ VA+ IRTTLGP+ M KML+D+ G IV+TNDG  IL E+D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L  AEE +D+N HP++I + Y  A E A  +L+ IA  +  +D  T+     + I  K   +  + +A++A++A   V   +G
Sbjct:    8 PVVILPEGTQRYVGRDAQRLNILAARIVAETIRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYALAAEKAQEILEGIAKEVSPDDVETLKKAAVTSITGKAAEEEREYLAEIAVEAVRQVAEKVG 190          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.947e-37
Identity = 82/201 (40.80%), Postives = 130/201 (64.68%), Query Frame = 2
Query:  263 HSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            + PV+VL +++KR  G      NI A + + + +R+TLGP+ M KML+D  G IVVTNDG  IL+E+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+L  AEE +D+N HPT++ + Y  A++ A  VL +IAM +  +D+  +  +  + I  K   +  + + ++ ++A T V  + G    +VD K  IK+ K
Sbjct:    4 NQPVVVLPENVKRFMGRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQLAVQKAQEVLKEIAMDVKADDKEILHKIAMTSITGKGAEKAKEKLGEMIVEAVTAVVDESG----KVD-KDLIKIEK 199          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.947e-37
Identity = 85/211 (40.28%), Postives = 129/211 (61.14%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRA--TMLGLVKSCIGTKFTSQF-------GDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            M  PVL+ K+   R SG      NI A+  +A++++++LGPR + KML+D+ G + +TNDG  I++E+++ HPAAK ++E ++ QD EVGDGTTS +VLAG +L  AEE +++N HPT+I   Y KAL  A+ ++D++++ ID ND +  T    +K  + T  +S+F        D I DL IDA T V      G   V +   IK+ K
Sbjct:    1 MAGPVLLFKEGTSRSSGRDALRNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKAEELLEQNVHPTIIIDGYKKALTKALEIIDQLSLKIDVNDLSSPTAKAQLKKIVSTTMSSKFIAGGAEEIDKIIDLVIDAITIVAEKRPDGTYNVPL-DLIKIDK 210          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.262e-36
Identity = 73/178 (41.01%), Postives = 118/178 (66.29%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            PV++LK+  +R  G +   ANI A +A+A I++TT GP+ M KML+D+ G I +TN+G  IL ++DVAHPAAK ++++S+ Q++E GDGT + ++ AGE+L  AE+ +D N HPT+I   Y +AL  A  V++ IA  +  +D   +  + K+ + +K  ++  D  A+LA++A  TV
Sbjct:   15 PVIILKEGTQRSYGREALRANIMAVRAIAQILKTTYGPKGMDKMLVDSLGDITITNNGATILDKMDVAHPAAKMLVQISKGQEDEAGDGTKTTVIFAGELLKEAEKLLDINIHPTIIVEGYKEALRKASEVIESIAEPVSYDDVEKLKLIAKTSLNSKAVAEARDYFAELAVEAVRTV 192          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.153e-36
Identity = 87/206 (42.23%), Postives = 126/206 (61.17%), Query Frame = 2
Query:  266 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGKGSWWPV 883
            +P++VL  ++KR  G      NI A + +A+ +RTTLGP+ M KML+D  G IVVTNDG  IL+E+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+L  AEE +D+N HP+VI   Y  A   AV  L  IA  +   D   +  +  + I  K   +  + +A++ ++A   V VD   G  +VD K  IKV K    P+
Sbjct:    6 APIVVLPQNVKRYVGRDAQRMNILAGRIIAETVRTTLGPKGMDKMLVDELGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNIHPSVIINGYEMARNKAVEELKSIAKEVKPEDTEMLKKIAMTSITGKGAEKAREQLAEIVVEAVRAV-VDEETG--KVD-KDLIKVEKKEGAPI 207          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.672e-36
Identity = 82/210 (39.05%), Postives = 128/210 (60.95%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTND------RATMLGLVKSCIGTKFTSQFGDL--IADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            M SPVL+LK+   R +G      NI A+K +A+++R++LGP+ + KML+D+ G + +TNDG  I++++++ HPAAK ++E ++ QD EVGDGTTS +VLAG +L  AE  +D+N HPT+I   Y KA   A+ +L ++   ID  D      R T+  +  + + +KF ++  +L  I D+ IDA   V   L  G   V +   IK+ K
Sbjct:    1 MASPVLLLKEGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYTKALELLPQLGTRIDIRDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAIVNVAEPLPNGGYNVSL-DLIKIDK 209          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 4.796e-36
Identity = 74/181 (40.88%), Postives = 119/181 (65.75%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVD 811
            P+ +L     R  G +    NI A K +A+ +RTTLGP+ M KML+D+ G IV+TNDG  ILRE+D++HPAAK ++E+++TQ++EVGDGTT+ +++AGE+L  AE+ I+   HPT+I   Y  A   A  +L++I+M  + +DR T++ +  + +  K + +  + +A+L +DA   V  D
Sbjct:    7 PIFILPQDTSRYVGREAQRINILAGKVLAETVRTTLGPKGMDKMLVDSLGDIVITNDGVTILREMDISHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKEAEKLIEMGVHPTIIALGYRNAALKAQEILEEISM--EASDRDTLMKVAITAMTGKGSERAKEKLAELVVDAVMQVEED 185          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 6.264e-36
Identity = 81/210 (38.57%), Postives = 128/210 (60.95%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTND------RATMLGLVKSCIGTKFTSQFGDL--IADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            M +PVL+LK+   R +G      NI A+K +A+++R++LGP+ + KML+D+ G + +TNDG  I++++++ HPAAK ++E ++ QD EVGDGTTS +VLAG +L  AE  +D+N HPT+I   Y KA   A+ +L ++   ID  D      R T+  +  + + +KF ++  +L  I D+ IDA   V   L  G   V +   IK+ K
Sbjct:    1 MAAPVLLLKEGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYNKALELLPQLGTRIDIKDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAIVNVAEPLPNGGYNVSL-DLIKIDK 209          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 6.780e-36
Identity = 75/195 (38.46%), Postives = 121/195 (62.05%), Query Frame = 2
Query:  263 HSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKK 847
            + P++VL +  +R SG      NI A KAVA+ +RTTLGP+ M KML+D+SG +VVTNDG  IL+E+D+ HPAA  ++E++ TQ+ EVGDGTT+ +V++GE+L  AE  ++++ H T + + Y +A E A  +LD  A+ +  +D  T+  +  + +  K       +++DL + A  +V  D       V ++K
Sbjct:    7 NQPLIVLSEDSQRTSGEDAQSMNITAGKAVAESVRTTLGPKGMDKMLVDSSGEVVVTNDGVTILKEMDIEHPAANMIVEVAETQETEVGDGTTTSVVVSGELLSEAETLLEQDIHATTLAQGYRQAAEKAKELLDDAAIDVSADDTETLEKIAATAMTGKGAENAKGVLSDLVVRAVQSVADDNDVDTDNVKVEK 201          

HSP 2 Score: 23.483 bits (49), Expect = 6.780e-36
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  852 LKLEKVPGGPLENSK 896
            +K+EKV GG +ENS+
Sbjct:  197 VKVEKVTGGAIENSE 211          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 8.181e-36
Identity = 74/190 (38.95%), Postives = 118/190 (62.11%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLA-------IDATTTVGVDLGQGLREVDIKK 847
            R+   ++  +NI A+KAVAD IRT+LGP+ M KM+ D  G + +TNDG  IL+++ V HPAA+ ++ELS+ QD E GDGTTSV+++AG +L    + + K  HPT+I  ++ KALE  + +L  ++  ++ +DR T+L    + + +K  SQ+  L++ ++       ID  T   VD    LR++ I K
Sbjct:   27 RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSATTSLNSKVASQYSSLLSPMSVNAVMKVIDPATATSVD----LRDIKIVK 212          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
THS_DESSY1.491e-3742.62Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THS_METTL1.947e-3740.80Thermosome subunit OS=Methanococcus thermolithotro... [more]
THSA_SULAC1.947e-3740.28Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]
THSB_AERPE1.262e-3641.01Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]
THS_METJA2.153e-3642.23Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THSA_SULSH3.672e-3639.05Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
THSA_METTH4.796e-3640.88Thermosome subunit alpha OS=Methanobacterium therm... [more]
THSA_SULSO6.264e-3638.57Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THSA_HALSA6.780e-3638.46Thermosome subunit alpha OS=Halobacterium salinari... [more]
TCPD_PONAB8.181e-3638.95T-complex protein 1 subunit delta OS=Pongo abelii ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
back to top