DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 151.754 bits (382), Expect = 8.181e-36
Identity = 74/190 (38.95%), Postives = 118/190 (62.11%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLA-------IDATTTVGVDLGQGLREVDIKK 847
            R+   ++  +NI A+KAVAD IRT+LGP+ M KM+ D  G + +TNDG  IL+++ V HPAA+ ++ELS+ QD E GDGTTSV+++AG +L    + + K  HPT+I  ++ KALE  + +L  ++  ++ +DR T+L    + + +K  SQ+  L++ ++       ID  T   VD    LR++ I K
Sbjct:   27 RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVD----LRDIKIVK 212          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 1.396e-35
Identity = 68/168 (40.48%), Postives = 110/168 (65.48%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            R+   ++  +NI A+KAVAD IRT+LGP+ M KM+ D  G + +TNDG  IL+++ V HPAA+ ++ELS+ QD E GDGTTSV+++AG +L    + + K  HPT+I  ++ KALE  + +L  ++   + +DR T+L    + + +K  SQ+  L++ +++DA   V
Sbjct:   30 RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKV 197          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.380e-35
Identity = 68/168 (40.48%), Postives = 109/168 (64.88%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            R+   ++ ++NI A+KAVAD +RT+LGP+ M KM+ D  G + +TNDG  IL+++ V HP+AK ++ELS+ QD E GDGTTSV+V+AG +L      + +  HPT+I  ++ KA++  V VL  ++  +   DR T+L    + + +K  SQ+  L+A +++DA   V
Sbjct:   24 RDKPAQIRYSNISAAKAVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAMSQPVQLGDRETLLNSATTSLCSKVVSQYSSLLAPMSVDAVMRV 191          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 2.380e-35
Identity = 74/168 (44.05%), Postives = 111/168 (66.07%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            RE   +V  +NI A+++VAD IRT+LGP+ M KM+    G +++TNDG  IL+ L V HPAAK +++LS  QD E GDGTTSV++LAG ML  AE+ + K  HPTVI  ++ +A    V  + + A+AI+ +DR ++L    + + +K  SQ+ +L+A +A+DA   V
Sbjct:   14 REKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKV 181          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 2.380e-35
Identity = 74/190 (38.95%), Postives = 117/190 (61.58%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLA-------IDATTTVGVDLGQGLREVDIKK 847
            R+   ++  +NI A+KAVAD IRT+LGP+ M KM+ D  G + +TNDG  IL+++ V HPAA+ ++ELS+ QD E GDGTTSV+++AG +L    + + K  HPT+I  ++ KALE  + +L  ++  +  +DR T+L    + + +K  SQ+  L++ ++       ID  T   VD    LR++ I K
Sbjct:   27 RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVD----LRDIKIVK 212          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 2.380e-35
Identity = 74/190 (38.95%), Postives = 117/190 (61.58%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLA-------IDATTTVGVDLGQGLREVDIKK 847
            R+   ++  +NI A+KAVAD IRT+LGP+ M KM+ D  G + +TNDG  IL+++ V HPAA+ ++ELS+ QD E GDGTTSV+++AG +L    + + K  HPT+I  ++ KALE  + +L  ++  +  +DR T+L    + + +K  SQ+  L++ ++       ID  T   VD    LR++ I K
Sbjct:   27 RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVD----LRDIKIVK 212          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.109e-35
Identity = 79/209 (37.80%), Postives = 134/209 (64.11%), Query Frame = 2
Query:  263 HSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTND------RATMLGLVKSCIGTKFTS--QFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            ++PVL+LK+  +R SG      NI A+  +A++++++LGPR + KML+D+ G + +TNDG  I++E+++ HPAAK ++E ++ QD EVGDGTTS +VLAG +L  A++ +D+N HPT+I   Y KAL  ++ ++D++A  ID ++      R  +  +V + + +KF +  +  D I ++ IDA + V   L +G   V +   IK+ K
Sbjct:    3 NAPVLLLKEGTQRSSGRDALKNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKADDLLDQNIHPTIIIEGYKKALNKSLEIIDQLATKIDVSNLNSLATRDQLKKIVYTTMSSKFIAGGEEMDKIMNMVIDAVSIVAEPLPEGGYNVPL-DLIKIDK 210          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.303e-35
Identity = 69/169 (40.83%), Postives = 112/169 (66.27%), Query Frame = 2
Query:  296 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            +R +G      NI A++A++++I+TT GP+ M KML+DA G + +TNDG  IL + ++ HPAAK +++++++QD EVGDGT   ++LAGE+L  AEE +DKN HPTVI   Y  A+E+A+ +LD++A  ID N+   +  + ++ + +K      +  AD+A+ A   V
Sbjct:    1 QRTTGRDALRTNILAARAISEMIKTTYGPKGMDKMLVDALGDVTITNDGATILDKAEIQHPAAKMLVQVAKSQDSEVGDGTKRAVILAGELLKYAEELLDKNIHPTVIISGYRMAMEEALKILDQMAEPIDLNNEELLRKVARTSLTSKAVHDAREFFADIAVKAVKQV 169          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.181e-34
Identity = 78/204 (38.24%), Postives = 115/204 (56.37%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGKGS 871
            M  P+ +L +   R  G     +NI+A KAVA+ +RTTLGPR M KML+D+SG +V+TNDG  IL ++D+ HPAA+ ++E+S+TQ+EEVGDGTT+  VL GE+L  AE+ +D + HPTVI   Y +A   A   +D + + +  +D         S  G        D++A   + A   V  D        D++   + G  S
Sbjct:    5 MQQPLYILAEGTNRTHGRSAQDSNIRAGKAVAEAVRTTLGPRGMDKMLVDSSGEVVITNDGATILEKMDIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDDDLHPTVIVEGYTEAARIAQDAIDDMVLDVTLDDDLLRKVAESSMTGKGTGDVTADVLAKHVVKAVQMVHEDDNGVFHRDDVRVLTRTGASS 208          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.543e-34
Identity = 75/188 (39.89%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVG 862
            RE   +V  ANI A++AVAD IRT+LGP+ M KM+  A G I+++NDG+ IL+++ + HP AK ++E+S  QD E GDGTTSV++L G +L  AE+ + K  HPT+I  ++ +A + AV VL  ++  I   DRA ++    + + +K  SQ+   +A LA+D   ++  +    +   DI+   KVG
Sbjct:   15 REKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTARGEILISNDGHTILKQMAILHPVAKMLVEVSAAQDSEAGDGTTSVVILTGALLGAAEKLLAKGIHPTIIAESFQRAGQRAVEVLLGMSKRISLQDRAELVRAASTSLSSKIVSQYSTFLAPLAVDCVLSLTNEASTNVDLNDIRLVKKVG 202          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TCPD_HUMAN8.181e-3638.95T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_BOVIN1.396e-3540.48T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_TAKRU2.380e-3540.48T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_SCHPO2.380e-3544.05T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_RAT2.380e-3538.95T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE2.380e-3538.95T-complex protein 1 subunit delta OS=Mus musculus ... [more]
THSA_SULTO3.109e-3537.80Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THSB_DESMO5.303e-3540.83Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
THS3_HALVO1.181e-3438.24Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPD_ASHGO1.543e-3439.89T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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