DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.632e-34
Identity = 80/202 (39.60%), Postives = 128/202 (63.37%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            M  P+      L  +   ++ + +  A+K ++ +IRT LGPR+M KM+L     I +TNDGNAILRELDVAHP+A+S+IEL++TQD+EVGDGTTSV++LA E+L+     +D++ HP  IC+A  +ALE  +  +D  A+++D+N+  T + ++   + +K  +     I +LA++A   V V   +   + D+K  +KV K
Sbjct:    1 MQKPIPRKMYILVPDKPAQIQNESAIAAKTISSVIRTCLGPRAMQKMVLTKINSIELTNDGNAILRELDVAHPSARSLIELAKTQDDEVGDGTTSVVLLAAEILNEMTYILDRDVHPIRICKALGRALEICIKAIDGAAISLDSNEE-TKIKIINGSVASKICNILKVPIGNLALEAVKKVYV---KEENKCDLKNNMKVEK 198          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.489e-34
Identity = 69/192 (35.94%), Postives = 122/192 (63.54%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIK 844
            P++++ +  +R         NI+A++AVA+ +R+TLGP+ M KML+D+ G + +TNDG  IL+E+D+ +P A+ ++E++ TQ++E GDGTT+ + +AGE+L  AE+ ++++ HPT I R +N A E A   +D IA  +D +D   +  + ++ +  K +    +L+ADL + A   V V+   G   VD++
Sbjct:   10 PMIIMGEDAQRVKDRDAQEYNIRAARAVAEAVRSTLGPKGMDKMLVDSMGDVTITNDGVTILKEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLEQDIHPTAIIRGFNLASEKAREEIDDIAERVDPDDEELLKKVAETSMTGKSSELNKELLADLIVRAVRQVTVEANDGSHVVDLE 201          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.863e-34
Identity = 70/181 (38.67%), Postives = 113/181 (62.43%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDI 841
            +E   +V  +NI A++AVAD IRT+LGP+ M KM+  A G ++++NDGN IL+ + V HPAAK +++LS +QD   GDGTTSV++LAG +L  A++ + K  HP++I   + KA + A  V+  ++  ID +DR T++    + + +K  SQF   +A + +DA         +G   +D+
Sbjct:   14 KEKPLEVRKSNILAARAVADAIRTSLGPKGMDKMIQTARGQVIISNDGNTILQHMAVMHPAAKMLVDLSASQDSVAGDGTTSVVILAGSLLGAADKLLKKGIHPSIIAENFQKAAQRAAEVVMDMSKPIDLSDRETLIRAASTSLNSKIVSQFSSTLAPMLVDAALQAAKKTPEGGLTLDL 194          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.658e-34
Identity = 74/178 (41.57%), Postives = 112/178 (62.92%), Query Frame = 2
Query:  317 VHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDA---TTTVGVDLGQGLREVDI 841
            +  +NI A+KAV+D IRT+LGPR M KM+  A+G + +TNDG  IL++++V HPAAK ++ELSR QD E GDGTTSV+V+AG +L   E+ +    HPT I  A+ K    AV +L +++  I+  DR +++    + + +K  SQ    +A +A++A    T  G + G  L+ V I
Sbjct:   26 IRQSNINAAKAVSDAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEMSTPIELTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKVTEAGHESGVDLKNVKI 203          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.306e-33
Identity = 70/188 (37.23%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVG 862
            RE   +V  ANI A++AVAD IRT+LGP+ M KM+  + G I+++NDG+ IL+++ + HP AK ++E+S  QD E GDGTTSV+++ G +L  AE+ ++K  HPT+I  ++ +A E +V +L  ++  I  +D+  ++    + + +K  SQ    +A LA+D   ++       +   DI+   KVG
Sbjct:   16 REKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTSRGDIIISNDGHTILKQMAILHPVAKMLVEVSGAQDVEAGDGTTSVVIMTGALLGAAEKLLNKGIHPTIIAESFQRAAERSVEILLNMSTKISLDDKEALVRAASTSLSSKIVSQHSSFLAPLAVDCVLSIASHDSTNVDLNDIRLIKKVG 203          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.228e-33
Identity = 68/190 (35.79%), Postives = 118/190 (62.11%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVD 838
            P++++ D  +R         NI A++AVAD +R+TLGP+ M KML+ + G + VTNDG  IL+E+D+ +P A+ ++E++ TQ++E GDGTT+ + +AGE+L  AE+ ++++ HPT I + YN A E A   +D +A+ +D +D+  +  + ++ +  K      +L++ +  DA   V V+   G   VD
Sbjct:   11 PMIIMGDDAQRVKDRDAQEHNISAARAVADAVRSTLGPKGMDKMLVSSMGDVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAEQAREEVDNVAVDVDPDDKDLIRSVAETSMTGKGAELDKELLSSIIYDAVNQVAVETNDGGIVVD 200          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.228e-33
Identity = 69/188 (36.70%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVG 862
            +E   +V  ANI A++AVAD IRT+LGP+ M KM+  + G I+++NDG+ IL+++ + HP AK ++++S  QD E GDGTTSV++L G +L  A+  ++K  HPT+I  ++ KA   +V  L +I   +  +DR  ++    + + +K  SQ+   ++ LA+DA  ++     + +   DI+   KVG
Sbjct:   15 KEKPQEVRRANIVAARAVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVAKMLVDVSAAQDSEAGDGTTSVVILTGALLGAADRLLNKGIHPTIIAESFQKAARRSVETLLEICHPVSLDDREDLIRAASTSLSSKIVSQYSSFLSPLAVDAVLSITEKDSKTVDLNDIRLVKKVG 202          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 8.466e-33
Identity = 67/188 (35.64%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVG 862
            +E   +V  ANI A+++VAD IRT+LGP+ M KM+  + G I+++NDG+ IL+++ + HP A+ ++E+S  QD E GDGTTSV++L G +L  AE  ++K  HPT+I  ++  A + +V +L ++   +  +DR  ++    + + +K  SQ+   +A LA+D+   +  +  + +   DI+   KVG
Sbjct:   14 KEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVG 201          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.106e-32
Identity = 68/178 (38.20%), Postives = 110/178 (61.80%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            PV++LK+   R  G +    NI A KAV + +++T GPR M KML+D+ G I +TNDG  IL ++D+ HPAAK ++++++ QDEE  DGT + ++LAGE++  AEE + K  HPT+I   + KA E A+  +++IA  +  ND   +  +  + + +K  +   + +AD+   A T V
Sbjct:   15 PVIILKEGSSRTYGKEALRINIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYKEIHPTIIVSGFKKAEEQALKTIEEIAQKVSVNDMDILKKVAMTSLNSKAVAGAREYLADIVAKAVTQV 192          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.106e-32
Identity = 70/173 (40.46%), Postives = 110/173 (63.58%), Query Frame = 2
Query:  284 KDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            KD  K ES   V ++NI A+KAVAD +RT+LGPR M KM+   +G + +TNDG  IL ++ V HP AK ++ELS+ QD E GDGTT+V+V+AG +L  A+  + K  HPT I  ++  A  +A  +LD+++  +D ++ A +  +  + + +K  SQ   L+A +A++A   +
Sbjct:   24 KDKDKPES---VRNSNIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDALLNKMATTSLNSKVVSQHSWLLAPMAVNAVKKI 193          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TCPG_ENCCU2.632e-3439.60T-complex protein 1 subunit gamma OS=Encephalitozo... [more]
THS2_HALVO4.489e-3435.94Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
TCPD_YARLI5.863e-3438.67T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
TCPD_AEDTR7.658e-3441.57T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPD_KLULA1.306e-3337.23T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
THSB_HALSA2.228e-3335.79Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPD_CANGA2.228e-3336.70T-complex protein 1 subunit delta OS=Candida glabr... [more]
TCPD_YEAST8.466e-3335.64T-complex protein 1 subunit delta OS=Saccharomyces... [more]
THSB_SULTO1.106e-3238.20Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
TCPD_CAEEL1.106e-3240.46T-complex protein 1 subunit delta OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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