DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.444e-32
Identity = 91/239 (38.08%), Postives = 140/239 (58.58%), Query Frame = 2
Query:  269 PVLVLKDSLKRES--GTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKI--AMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGKGSWWPVGKF*GFLKDLCSTK-----KFFAPGKMGKK 958
            P L++KD  ++    G +   ++I A+KAVA+ +RT+LGP  + KM++D  G + VTNDG  IL  +DV H  AK M+ELS++QD+E+GDGTT V+VLAG +L  AE+ +D+  HP  I   Y +A   A+  LDKI  ++ +D  D   ++   K+ +G+K  +     +A++A++A  TV  D+ +  R+VD  + IKV        GK  G L+D    K     K F+  +M KK
Sbjct:   15 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV-ADMER--RDVDF-ELIKV-------EGKVGGRLEDTKLIKGVIVDKDFSHPRMPKK 242          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.886e-32
Identity = 79/203 (38.92%), Postives = 126/203 (62.07%), Query Frame = 2
Query:  269 PVLVLKDSLKRES--GTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIA--MAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            P L++KD  ++    G +   ++I A+KAVA+ +RT+LGP  + KM++D  G + VTNDG  IL  +DV H  AK M+ELS++QD+E+GDGTT V+VLAG +L  AE+ +D+  HP  I   Y +A   A+  LDKI+  + +D N+   ++   K+ +G+K  +     +A++A++A  TV  D+ +  R+VD +     GK
Sbjct:   15 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDNVLVDINNPEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV-ADMER--RDVDFELIKVEGK 214          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.886e-32
Identity = 79/203 (38.92%), Postives = 125/203 (61.58%), Query Frame = 2
Query:  269 PVLVLKDSLKRES--GTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKI--AMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            P L++KD  ++    G +   ++I A+KAVA+ +RT+LGP  + KM++D  G + VTNDG  IL  +DV H  AK M+ELS++QD+E+GDGTT V+VLAG +L  AE+ +D+  HP  I   Y +A   A+  LDKI  ++ +D  D   ++   K+ +G+K  +     +A++A++A  TV  D+ +  R+VD +     GK
Sbjct:   15 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV-ADMER--RDVDFELIKVEGK 214          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.886e-32
Identity = 79/203 (38.92%), Postives = 125/203 (61.58%), Query Frame = 2
Query:  269 PVLVLKDSLKRES--GTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKI--AMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            P L++KD  ++    G +   ++I A+KAVA+ +RT+LGP  + KM++D  G + VTNDG  IL  +DV H  AK M+ELS++QD+E+GDGTT V+VLAG +L  AE+ +D+  HP  I   Y +A   A+  LDKI  ++ +D  D   ++   K+ +G+K  +     +A++A++A  TV  D+ +  R+VD +     GK
Sbjct:   15 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV-ADMER--RDVDFELIKVEGK 214          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 2.463e-32
Identity = 67/178 (37.64%), Postives = 110/178 (61.80%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            PV++LK+   R  G +    NI A KAV + ++TT GPR M KML+D+ G I +TNDG  IL ++D+ HPAAK ++++++ QDEE  DGT + ++ +GE++  AEE + K  HPT+I   Y KA E A+  +++I+  +  ND   +  +  + + +K  +   + +AD+ + A T V
Sbjct:   15 PVIILKEGSSRTYGKEALRINIAAVKAVEEALKTTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEELLYKEIHPTIIVSGYKKAEEMAIKTIEEISTKVSVNDTEILRKVALTSLSSKAVAGAREHLADIVVKAITQV 192          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.217e-32
Identity = 78/203 (38.42%), Postives = 126/203 (62.07%), Query Frame = 2
Query:  269 PVLVLKDSLKRES--GTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIA--MAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVGK 865
            P L++KD  ++    G +   ++I A+KAVA+ +RT+LGP  + KM++D  G + +TNDG  IL  +DV H  AK M+ELS++QD+E+GDGTT V+VLAG +L  AE+ +D+  HP  I   Y +A   A+  LDKI+  + +D N+   ++   K+ +G+K  +     +A++A++A  TV  D+ +  R+VD +     GK
Sbjct:   15 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTV-ADMER--RDVDFELIKVEGK 214          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 4.202e-32
Identity = 67/178 (37.64%), Postives = 108/178 (60.67%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            PV++LK+   R  G +   ANI A KA+ + +++T GPR M KML+D+ G I +TNDG  IL ++D+ HP  K ++++++ QDEE  DGT + ++LAGE+   AE+ + K  HPT+I   Y KA E A+  + +IA  +  ND   +  +  + +G+K  +   + +ADL + A   V
Sbjct:   14 PVIILKEGSSRTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQEIAQPVTINDTDVLRKVALTSLGSKAVAGAREYLADLVVKAVAQV 191          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 7.167e-32
Identity = 75/201 (37.31%), Postives = 122/201 (60.70%), Query Frame = 2
Query:  257 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGT----KFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKK 847
            +M +PV++LK+      G     +NI A + +A+ +RTTLGPR M K+++D  G   ++NDG  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++++  HP +I RA+  A + AV  +  IA+++   D+     L++ C  T    K  SQ  +  + + +DA   +  DL Q L+ + IKK
Sbjct:    1 MMPTPVILLKEGTDTSQGIPQLVSNINACQVIAEAVRTTLGPRGMDKLIVDDRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKDIAVSVKKEDKDEQRSLLEKCAATALSSKLISQSKEFFSKMVVDAVMMLD-DLLQ-LKMIGIKK 199          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 7.167e-32
Identity = 75/201 (37.31%), Postives = 122/201 (60.70%), Query Frame = 2
Query:  257 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSC----IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKK 847
            +M +PV++LK+      G     +NI A + +A+ +RTTLGPR M K+++D  G   ++NDG  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++++  HP +I RA+  A + AV  + +IA+ +   D+     L++ C    + +K  SQ     A + +DA   +  DL Q L+ + IKK
Sbjct:    1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-DLLQ-LKMIGIKK 199          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.223e-31
Identity = 75/201 (37.31%), Postives = 122/201 (60.70%), Query Frame = 2
Query:  257 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSC----IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKK 847
            +M +PV++LK+      G     +NI A + +A+ +RTTLGPR M K+++D  G   ++NDG  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++++  HP +I RA+  A + AV  + +IA+ +   D+     L++ C    + +K  SQ     A + +DA   +  DL Q L+ + IKK
Sbjct:    1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-DLLQ-LKMIGIKK 199          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TCPE_PONAB1.444e-3238.08T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_RAT1.886e-3238.92T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_MACFA1.886e-3238.92T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN1.886e-3238.92T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
THSB_SULAC2.463e-3237.64Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
TCPE_MOUSE3.217e-3238.42T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
THSB_SULSO4.202e-3237.64Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
TCPH_CHICK7.167e-3237.31T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPH_BOVIN7.167e-3237.31T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPH_PONAB1.223e-3137.31T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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