DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.223e-31
Identity = 75/201 (37.31%), Postives = 122/201 (60.70%), Query Frame = 2
Query:  257 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSC----IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKK 847
            +M +PV++LK+      G     +NI A + +A+ +RTTLGPR M K+++D  G   ++NDG  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++++  HP +I RA+  A + AV  + +IA+ +   D+     L++ C    + +K  SQ     A + +DA   +  DL Q L+ + IKK
Sbjct:    1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-DLLQ-LKMIGIKK 199          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.223e-31
Identity = 75/183 (40.98%), Postives = 115/183 (62.84%), Query Frame = 2
Query:  266 SPVLVLKDSLKRES--GTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRAT--MLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            +P ++++D  K+    G     ++I A+K VA+I+RT+LGPR + K+L+   G I VTNDG  IL +++V H  AK +++LS++QD+E+GDGTT V+VLAG +L  AE  IDK  HP  I   Y KA + AV  LD I+  +D +   T  +    K+ +G+K  S+  D  A++A+DA  +V
Sbjct:   16 NPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSV 198          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.223e-31
Identity = 67/173 (38.73%), Postives = 110/173 (63.58%), Query Frame = 2
Query:  296 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVA-VLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVD 811
            KR +G  +   N+ A+ A+A+I++++LGP  + KML+D  G ++VTNDG  IL++L+V HPA K ++EL++ QDEEVGDGTTSV+++A E+L  A+E + +  HPT I   Y  A ++AV  + + I+   D+  R +++   K+ + +K      D   +L +DA   V V+
Sbjct:   14 KRTTGQGIRSQNVTAAVAIANIVKSSLGPVGLDKMLVDDVGDVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKYISENISFTSDSIGRQSVVNAAKTSMSSKIIGPDADFFGELVVDAAEAVRVE 186          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.597e-31
Identity = 66/178 (37.08%), Postives = 106/178 (59.55%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            PV++LK+   R  G +   ANI A KA+ + +++T GPR M KM +D+ G I +TNDG  IL ++D+ HP  K ++++++ QDEE  DGT + ++LAGE+   AE+ + K  HPT+I   Y KA E A+  +  IA  +  ND   +  +  + +G+K  +   + +ADL + A   V
Sbjct:   14 PVIILKEGSSRTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMFVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQDIAQPVSINDTDVLRKVALTSLGSKAVAGAREYLADLVVKAVAQV 191          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.724e-31
Identity = 78/203 (38.42%), Postives = 126/203 (62.07%), Query Frame = 2
Query:  278 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKF--TSQFGDLIADLAIDATTTVGVDLGQGLREVDIK--KCIKVGKGSW 874
            +L++  +R +G +V   NI  +K + ++++++LGP+ + KML++    + +TNDG  I++ ++V HP AK +IE ++T D EVGDGTTSV+VLAG +L  AE+ +++  HPTVI   Y KAL  ++ +L  IA  I   DR  +  LV + + +KF  T    + I +L IDA+  V +D   G  ++DIK  K +KV  G +
Sbjct:    4 LLREGTQRSTGNEVILNNIAVAKILLEMLKSSLGPKGLDKMLVEGQD-VTITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALNSSLELLKNIADKISPEDRKIVHDLVYTTLSSKFFSTEHTLEKIINLVIDASLAV-LDKRDGSYDLDIKNIKIVKVNGGEF 204          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 3.557e-31
Identity = 72/178 (40.45%), Postives = 112/178 (62.92%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLL----DASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDA 790
            PV +LKD+ + E G     ++   + A+ D++++TLGP+ M K+L+    +++GGI VTNDG  IL+ + V +PAAK ++++S TQD EVGDGTTSV VLA E+L  AE+ +++  HP  I   Y +AL  A   L K ++    N R  +L + ++ +G+K  SQ  +  A LA+DA
Sbjct:    3 PVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKKSSIESGDNIRDDLLKIARTTLGSKILSQHKEHFAQLAVDA 180          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.646e-31
Identity = 78/203 (38.42%), Postives = 126/203 (62.07%), Query Frame = 2
Query:  278 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKF--TSQFGDLIADLAIDATTTVGVDLGQGLREVDIK--KCIKVGKGSW 874
            +L++  +R +G +V   NI  +K + ++++++LGP+ + KML++    I +TNDG  I++ ++V HP AK +IE ++T D EVGDGTTSV+VLAG +L  AE+ +++  HPTVI   Y KAL  ++ +L  IA  I   DR  +  LV + + +KF  T    + I +L I+A+  V +D   G  ++DIK  K +KV  G +
Sbjct:    4 LLREGTQRSTGNEVILNNIAVAKILLEMLKSSLGPKGLDKMLVEGQD-ITITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALSSSLELLKSIADKISPEDRKIVHDLVYTTLSSKFFSTEHTLEKIINLVIEASLAV-LDKRDGTYDLDIKNIKIVKVNGGEF 204          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.646e-31
Identity = 72/201 (35.82%), Postives = 121/201 (60.20%), Query Frame = 2
Query:  257 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSC----IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKK 847
            +M +PV++LK+      G     +NI A + +A+ +RTTLGPR M K+++D  G   ++NDG  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++++  HP +I RA+  A + AV  + +IA+ +   D+     +++ C    + +K  SQ     A + +DA   + +D    L+ + IKK
Sbjct:    1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDA--VMMLDELLQLKMIGIKK 199          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.646e-31
Identity = 68/180 (37.78%), Postives = 115/180 (63.89%), Query Frame = 2
Query:  269 PVLVLKD--SLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            P +V+++  + KR +G +   ++I A++AVA+ +RT+LGPR + KML+   G + +TNDG  I+ ++DV H  AK M+ELS++QD E+GDGTT V+VLAG +L  AE+ ID+  HP  I   ++ A + A+  LD I+      +R  ++   ++ +G+K  ++     A++A+DA  +V
Sbjct:   16 PFIVMREQENQKRITGVEAVKSHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSISDKFPVENRERLVETAQTSLGSKIVNRSLRQFAEIAVDAVLSV 195          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 6.067e-31
Identity = 76/198 (38.38%), Postives = 114/198 (57.58%), Query Frame = 2
Query:  269 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQF----GDLIADLAIDATTTVG-VDLGQGLREVDIKK 847
            PV+VLK+      G     +NI A  AV D IRTTLGP    K+++D  G +V++NDG  I++ LD+ HPAAK++++++R QD EVGDGTTSV+V AGE+L  A  F++      +I R Y KA + AV  + +IA+ +D +D   +  L+  C  T   S+           + +DA  T+   DL + +  + IKK
Sbjct:    9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENM--IGIKK 204          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TCPH_HUMAN1.223e-3137.31T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPE_SCHPO1.223e-3140.98T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPA_CAEEL1.223e-3138.73T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
THSB_SULSH1.597e-3137.08Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
THSG_SULSO2.724e-3138.42Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
TCPB_CAEEL3.557e-3140.45T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
THSG_SULSH4.646e-3138.42Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
TCPH_MOUSE4.646e-3135.82T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPE_CAEEL4.646e-3137.78T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPH_SCHPO6.067e-3138.38Probable T-complex protein 1 subunit eta OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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