DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.924e-31
Identity = 66/181 (36.46%), Postives = 111/181 (61.33%), Query Frame = 2
Query:  305 SGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL-DKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIK 844
            SG  V + N+ A+ A+A++++++LGP  + KML+D  G + VTNDG  IL  LDV HPA K ++EL++ QD+EVGDGTTSV+++A E+L  A E +    HPT I   Y  A+ +AV  + D ++ ++D+  + +++ + K+ + +K      D  + +A+DA  +V     +G     +K
Sbjct:   18 SGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVK 198          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.306e-30
Identity = 66/169 (39.05%), Postives = 110/169 (65.09%), Query Frame = 2
Query:  296 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            ++E    V  +NI A++AVAD IRT+LGP+ M KM++  +  ++++NDG  IL+ L++ HPAAK + EL++ QD E GDGTTSV V+AG +L    + + K  HP++I  A+N AL  ++ VL  +++ +   DR +++    + + +K  SQ+ +L A +A+DA  +V
Sbjct:   20 EKEKEKDVRTSNIVAARAVADAIRTSLGPKGMDKMIISPNNEVLISNDGATILQNLELRHPAAKMLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLMAKGIHPSIISEAFNLALNKSLEVLVSMSVPVSLTDRVSLVKSATTSLNSKVVSQYTNL-ASIAVDAVLSV 187          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.306e-30
Identity = 66/169 (39.05%), Postives = 110/169 (65.09%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDK-IAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            R SG +V   N+ A  A+A+I++T+ GP  + KML+D  G IVVTNDG  IL+++D+ HPAAK +++LS  QD+EVGDGTT+V++LA E+L  A E + +  HPTVI   +  A  +A+  +++ +A+ ++T  +  ++ + K+ + +K  +   D  + + I+A T V
Sbjct:   12 RISGNEVRAQNVLAVTAIANIVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDFIVNIAKTSMSSKTINDDSDFFSKIVIEAITRV 180          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPG_PIG (T-complex protein 1 subunit gamma (Fragment) OS=Sus scrofa GN=CCT3 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.011e-30
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 2
Query:  338 ASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVA 580
            A+K +ADIIRT LGP+SM+KMLLD  GGIV+TNDGNAILRE+ V HPAAKSMIE+SRTQDEEVGDGTTSVI+LAGEML VA
Sbjct:    2 AAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVA 82          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 3.933e-30
Identity = 64/181 (35.36%), Postives = 110/181 (60.77%), Query Frame = 2
Query:  305 SGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKI-AMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIK 844
            SG  + + N+ A+ AVA++++++LGP  + KML+D  G   VTNDG  IL  LDV HPA K ++EL++ QD E+GDGTTSV+++A E+L  A E +    HPT I   +  AL +A+  ++++ + ++DT  + T++ + K+ + +K      D  +++ +DA   V     +G  +  +K
Sbjct:   21 SGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVK 201          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 5.136e-30
Identity = 67/183 (36.61%), Postives = 112/183 (61.20%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVA-VLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIK 844
            R+SG  V   N+ A+ ++++I++++LGP  + KML+D  G + VTNDG  ILR L+V HPAAK ++EL++ QDEEVGDGTTSV++LA E+L  A+E + +  HPT I   Y  A ++A   + + +   +D   R +++ + K+ + +K      +  + + +DA  +V +   +G     IK
Sbjct:   14 RQSGASVRTQNVMAALSISNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPVDELGRDSLINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITDPRGQAAYSIK 196          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.708e-30
Identity = 65/190 (34.21%), Postives = 117/190 (61.58%), Query Frame = 2
Query:  257 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDK----IAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDL 814
            +M   +L+LKD      G     +NI A +++ +I++TTLGPR M K L++ + G  ++NDG  IL  LD+ HPAAK+++++++ QD+EVGDGTTSV +LAGE+L  ++ FI++  HP ++ + Y +AL+ A+  L +    +A   D   R  +L   ++ + +K  + + +  +++ + A  T+  +L
Sbjct:    1 MMQPTILLLKDGTDTSQGKAQIISNINAVQSIVEIVKTTLGPRGMDK-LIEGNRGATISNDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVTKGYKEALKLALTFLQENSYSVADKSDGEKREMLLKCAQTSLNSKLLAHYKEFFSEMVVQAVETLDTNL 189          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.708e-30
Identity = 67/188 (35.64%), Postives = 115/188 (61.17%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKCIKVG 862
            +E   +V  +NI A++AV+D IRT+LGP+ M KM+   +G I+++NDG  IL+ + V HPAA+ ++++S  QD E GDGTTSV +L G +L  AE+ ++K  HPT+I  ++ +A   +  VL +++  I  +D+  ++    + + +K  SQ   L++ LA+++   V  +    +   DI+   KVG
Sbjct:   19 KEKPQEVRKSNILAARAVSDAIRTSLGPKGMDKMIKTKNGEIIISNDGATILKHMAVLHPAARMLVDVSAAQDVEAGDGTTSVAILTGSLLGAAEKLLNKGIHPTLISESFQRAATRSAEVLLEMSHKISLDDKEALIRAASTSLSSKIVSQHSSLLSPLAVNSVLKVMNEEHTNVDLNDIRLIKKVG 206          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.708e-30
Identity = 65/170 (38.24%), Postives = 108/170 (63.53%), Query Frame = 2
Query:  296 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVA-VLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            +R+ G  V   N+ A  A+A+I++++LGP+ + KML+D  G + +TNDG  ILR+L+V HPAAK ++ELS+ QD+EVGDGTTSV++LA E+L  A E I    HPT I   +  A ++A   + + +A++++   R  ++   K+ + +K      +L + + +DA  +V
Sbjct:   10 ERDQGQDVRTNNVTAVMAIANIVKSSLGPQGLDKMLVDDVGDVTITNDGATILRQLEVQHPAAKVIVELSQLQDKEVGDGTTSVVILAAELLKRANELIKNKVHPTSIITGFKIAAKEACTYIKEHLAISVEELGREALINAAKTSMSSKLIGPESNLFSQIVVDAVESV 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.952e-29
Identity = 67/183 (36.61%), Postives = 110/183 (60.11%), Query Frame = 2
Query:  299 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL-DKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIK 844
            R+SG  V   N+ A +AV++I++T+LGP  + KML+D  G + +TNDG  ILR L+V HPAAK ++EL+  QD EVGDGTTSV+++A E+L  A + +    HPT I   Y  A+ ++   + +K+   ++   +  ++   K+ + +K  S   D  A+L ++A  +V +   +G  +  IK
Sbjct:   14 RQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIK 196          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TCPA_SCHPO7.924e-3136.46T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPD_DICDI2.306e-3039.05T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPA_DICDI2.306e-3039.05T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPG_PIG3.011e-3081.48T-complex protein 1 subunit gamma (Fragment) OS=Su... [more]
TCPA_YEAST3.933e-3035.36T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPA_DROME5.136e-3036.61T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPH_TETPY6.708e-3034.21T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPD_DEBHA6.708e-3035.64T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
TCPA_TETPY6.708e-3038.24T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPA_ARATH1.952e-2936.61T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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