DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.329e-29
Identity = 68/176 (38.64%), Postives = 108/176 (61.36%), Query Frame = 2
Query:  296 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTN--DRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 817
            +R SG  V   N+ A+ + A+ ++T+LGP  + KML+D  G + +TNDG  IL+ LDV HPAAK +++L++ QDEEVGDGTTSV++LA  +L  A+E I +  HPT +   Y  A  +A   + +  MA D N   +A ++ + ++ + +K  +   D+ + +A+DA   V V  G
Sbjct:    7 ERTSGESVRKQNVLAACSFANFVKTSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQE-HMAYDVNKLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAVEVSGG 181          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.679e-29
Identity = 67/182 (36.81%), Postives = 110/182 (60.44%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL-DKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            +  P+ VL +   R SG  V + N+ A+  +A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  ++E + +  HPT I   Y  A ++AV  + + + +  D   R  ++   K+ + +K     GD  A + +DA + V
Sbjct:    4 LEGPLAVLGE---RSSGDTVRNQNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELGRDCLINSAKTSMSSKIIGIDGDFFASMVVDAASAV 182          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.417e-29
Identity = 66/182 (36.26%), Postives = 109/182 (59.89%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL-DKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            M  P+ V  D   R +G  +   N+ A+ ++A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV  + + + +  D   R  ++   K+ + +K     GD  A++ +DA   V
Sbjct:    1 MEGPLSVFGD---RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAV 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.417e-29
Identity = 66/182 (36.26%), Postives = 109/182 (59.89%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVA-VLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            M  P+ V  D   R +G  +   N+ A+ ++A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV  + + + +  D   R  ++   K+ + +K     GD  A++ +DA   V
Sbjct:    1 MEGPLSVFGD---RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAV 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.417e-29
Identity = 66/182 (36.26%), Postives = 109/182 (59.89%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVA-VLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            M  P+ V  D   R +G  +   N+ A+ ++A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV  + + + +  D   R  ++   K+ + +K     GD  A+L +DA   +
Sbjct:    1 MEGPLSVFGD---RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAI 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.687e-29
Identity = 65/182 (35.71%), Postives = 109/182 (59.89%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL-DKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            M  P+ V  D   R +G  +   N+ A+ ++A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV  + + + +  D   R  ++   K+ + +K     GD  A++ +DA   +
Sbjct:    1 MEGPLSVFGD---RSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAI 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.158e-28
Identity = 69/187 (36.90%), Postives = 117/187 (62.57%), Query Frame = 2
Query:  260 MHSPVLVLKD--SLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL----DKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            M  P +++KD  + KR+ G +   ++I A+++VA II+T+LGPR + K+L+   G I +TNDG  IL ++++ +  AK +++LS++QD+E+GDGTT V+VLA  +L  A E I K  HP  I   +++A + A++ L    D I+ + D   R  +L   K+ +G+K  S+  D  A++A++A   V
Sbjct:   25 MGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINV 211          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.158e-28
Identity = 64/183 (34.97%), Postives = 116/183 (63.39%), Query Frame = 2
Query:  266 SPVLVLKDSLKRES--GTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAID--TNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            +P +V++D   +E   G + H ++I A+K +++I++++LGP+ M KM++   G ++VTNDG  IL  + V +  AK M++LS++QD+E+GDGTT V+VLAG +L  AE+ I+K  HP  I   Y  A + A   L  I+ +I+   ++   ++    +C+G+K  ++F   ++++A+ A  +V
Sbjct:   10 NPFIVIRDQQAKERLRGIEAHRSHILAAKTISNIMKSSLGPKGMDKMMVSQDGEVLVTNDGATILENMQVDNQIAKLMVQLSKSQDDEIGDGTTGVVVLAGSLLEQAEQLIEKGIHPCRIYEGYETACKIATEHLKTISDSIEFSKDNIEPLIKTAMTCLGSKIVNRFHRQMSEIAVKAVISV 192          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.158e-28
Identity = 66/182 (36.26%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL-DKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            M  P+ V  D   R +G  V   N+ A+ ++A+I++++ GP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV  + + + +  D   R  ++   K+ + +K     GD  A++ +DA   V
Sbjct:    1 MEGPLSVFGD---RSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELGRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAV 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.158e-28
Identity = 66/182 (36.26%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL-DKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            M  P+ V  D   R +G  +   N+ A+ ++A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV  + + + +  D   R  +    K+ + +K     GD  A++ +DA   V
Sbjct:    1 MEGPLSVFGD---RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINADELGRDCLTNTAKTSMSSKIIGINGDYFANMVVDAVLAV 179          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TCPA_SCHMA3.329e-2938.64T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPA_PALPA5.679e-2936.81T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPA_RAT7.417e-2936.26T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_CRIGR7.417e-2936.26T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPA_BOVIN7.417e-2936.26T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPA_HUMAN9.687e-2935.71T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
TCPE_YEAST2.158e-2836.90T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPE_DICDI2.158e-2834.97T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPA2_MOUSE2.158e-2836.26T-complex protein 1 subunit alpha B OS=Mus musculu... [more]
TCPA1_MOUSE2.158e-2836.26T-complex protein 1 subunit alpha A OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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