DY305482

Overview
NameDY305482
Unique NameDY305482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1272
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 4.237e-72
Identity = 142/263 (53.99%), Postives = 184/263 (69.96%), Query Frame = 3
Query:   21 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEP-TENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLD----AEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEEL*KKGNAAIRADPNRKKSEKK 794
            MAF KA K+KAYFKR+QVKY+RRREGKTDY AR RLI QDKNKYN PKYRFVVR TN  +  Q++ A++ GD ++ SA + EL RYG++VGLTNY+AAY TGLLLARR+LK   +  E++G  + +GE+Y +E  +E RRPF+ +LDVG+V TT GNRVF            IPHS KRF GF+K     D     EVHR  IY  HVA YMRTL E++PE+YQ+ F  YI+  I+ D++E++ ++    IRA+P+  K E +
Sbjct:    1 MAFVKAIKNKAYFKRFQVKYRRRREGKTDYAARRRLILQDKNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKEEDPERYQAQFSAYIRNKIDPDSIEKMYEEAFQKIRANPDPVKKEAR 263          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 5.534e-72
Identity = 150/308 (48.70%), Postives = 199/308 (64.61%), Query Frame = 3
Query:   21 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEEL*KKGNAAIRADPNRKKSEKKPPAEDKKDNLKKLEVREREAGLIGR---VKGLLAGKEQRTEKMECK 923
            M F +  K+KAYF+R+QVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +  QI+S+++ GD V ASA + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D+++ G VEA GE Y VE  +N RRPF+ALLDVG+   TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E++PEKY+  F  Y+K G+++++LE++    +  IR          K P    K   K   VRE    L  +   V+ +   K QR E+++ K
Sbjct:    1 MTFLRVVKNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEDDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGTYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKKQFSAYLKLGLDSESLEDMYASAHENIR----------KNPVLPTKPKRKLKHVREGSKVLTSKGSYVRNVKITKAQRRERVKQK 298          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 3.966e-70
Identity = 132/279 (47.31%), Postives = 187/279 (67.03%), Query Frame = 3
Query:   21 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEEL*KKGNAAIRADPNRKKSEKKPPAEDKKDNLKKLEVREREA 854
            M F K  K+KAY+ RYQV+++RRREGKTDY+ R RLI QDKNKYN+PKYR V R TN D+ AQ++ + I GD VL +AYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++   Y+G  +  G+ + V+P +++ RPF+A LDVGL +T+TG +VF            +PH E RFAG++ +SK+L+AE  R YI+  HVA+YM  L  ++ + Y+  F  YIK G+   ++E +    + AIRA+P       K   + K  NL K  +++++A
Sbjct:    1 MGFVKVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTDVIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIYANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKA 279          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 5.180e-70
Identity = 144/281 (51.25%), Postives = 181/281 (64.41%), Query Frame = 3
Query:   21 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEEL*KKGNAAIRADPNRKKSEKKP---PAEDKKDNLKKLEVRERE 851
            M F KA KS  YF RYQ KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+ E+YQ  F   I  GIE+D LE++  +  A IR DP+ +KS K      AE  K   +KL   ER+
Sbjct:    1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERK 281          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 8.835e-70
Identity = 144/281 (51.25%), Postives = 181/281 (64.41%), Query Frame = 3
Query:   21 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEEL*KKGNAAIRADPNRKKSEKKP---PAEDKKDNLKKLEVRERE 851
            M F KA KS  YF RYQ KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+ E+YQ  F   I  GIE+D LE++  +  A IR DP+ +KS K      AE  K   +KL   ER+
Sbjct:    1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERK 281          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 2.423e-43
Identity = 85/124 (68.55%), Postives = 99/124 (79.84%), Query Frame = 3
Query:   21 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVE 392
            M F K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.473e-32
Identity = 72/107 (67.29%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  567 SKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEEL*KKGNAAIRADPNRKKSEKKPPAEDKKDNLKKLEVREREAGLIGRVKGLLA 887
            SKDSKQLDAEVHRKYIY GHVAAYM  LMEDEPEKYQSHF  YIK  +  DN+EE+ KK +AAIR DP+ KKS+K+PP   K+ NLKKL   ER+A LI R+  L A
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALNA 108          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.386e-20
Identity = 73/220 (33.18%), Postives = 104/220 (47.27%), Query Frame = 3
Query:   66 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL 725
            Y+V ++RRREGKTDY AR++L++ DK+       R VVR +N   T Q+I  +  GDI LASA + +L  YG   G +N +A Y TG L A+R L              A G D             A+LD+GL     G++VF            IP+ E        D  +++ E         HVA Y  +L +DE  K    F  Y++RG++  +L
Sbjct:    7 YKVPFRRRREGKTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGE----AVLPDESRINGE---------HVANYAESLDDDEIAKL---FSKYLERGLQPADL 177          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_HYPBU (50S ribosomal protein L18P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.386e-20
Identity = 79/228 (34.65%), Postives = 106/228 (46.49%), Query Frame = 3
Query:   51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            A+  RY+V  +RRREGKT+Y  R  ++   K        RFVVR TN+ I  Q+I A   GD+ +A+A++ EL  +YG   G  N  AAY TGLL A R LK               G  Y            A+LD+GL + T G RVF            IPHSE           ++  E +R  I   H+A Y   L E  PE Y+  F  Y+ RG+  ++L +
Sbjct:    2 AHGPRYKVPRRRRREGKTNYYKRYVMVLSGKP-------RFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALK--------------AGITY------------AVLDIGLHRPTRGARVFAALKGALDAGLEIPHSE-----------EVLPEEYR--IRGEHIAKYAAMLKEQNPELYEKRFSLYLARGLNPEDLPQ 183          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.187e-19
Identity = 77/254 (30.31%), Postives = 118/254 (46.46%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTD-YRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEEL*KKGNAAIRADPNRKKSEKKPPAEDKK 815
            RY+VK++RRREGKTD Y+ RI +I        + K R VVRF+N+ + AQ+I ++  GD  +A A + EL  ++G   G  N  AAY  GLL+  R L K +++                           A+LDVGL + T G R+F            +PH E+          +L+ E         H+A Y   L +  PE Y+  F  Y+ RG+E +N+     K    +++    K ++ +  AED +
Sbjct:    6 RYKVKFRRRREGKTDYYKRRIMVI--------SGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDEE----VQPSEDRLNGE---------HIAQYAADLKQSNPELYKIRFSKYLARGLEPENI----SKHIEEVKSKIMEKYAKSEAKAEDSQ 207          
The following BLAST results are available for this feature:
BLAST of DY305482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RL5_EIMTE4.237e-7253.9960S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5_THEAN5.534e-7248.7060S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL5_DICDI3.966e-7047.3160S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5A_SCHPO5.180e-7051.2560S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5B_SCHPO8.835e-7051.2560S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5_PIG2.423e-4368.5560S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL5_SOLME1.473e-3267.2960S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL18_METS38.386e-2033.1850S ribosomal protein L18P OS=Methanobrevibacter s... [more]
RL18_HYPBU8.386e-2034.6550S ribosomal protein L18P OS=Hyperthermus butylic... [more]
RL18_CALMQ3.187e-1930.3150S ribosomal protein L18P OS=Caldivirga maquiling... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305482 ID=DY305482; Name=DY305482; organism=Citrus sinensis; type=EST; length=1272bp
GTACACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAA
GCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAA
GACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGT
ACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATC
ACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATC
TGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTA
ATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTG
AAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGG
AGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCC
TGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGC
GCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAA
GAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTC
ACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTG
ATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGATTACATCAA
GAGAGGTATTGAGGCTGATAACCTGGAAGAGTTGTAAAAGAAGGGTAATG
CTGCCATCCGTGCAGACCCTAACCGAAAAAAATCTGAAAAAAAGCCTCCA
GCAGAAGACAAGAAGGACAACCTGAAAAAACTGGAAGTACGAGAAAGGGA
AGCCGGGTTAATTGGAAGGGTGAAAGGACTCCTTGCTGGTAAAGAACAAA
GAACCGAGAAAATGGAGTGCAAACGAAGAAGTTTTTTGTTCCTAAGGTCA
GTGGGGGATTTCGGGGAAATACGAAAATGTAAGGAACCGGGCGGGTGTGG
AAGGGTGGAGAACGGTTTTTTGTGCTGGGAGTTCCCACGGAGGCGGGAAA
CGTCGGGGGGGGTGCGCAAAACCCTGGAGTGGAACTCTTTTGTCGGCCGG
GGTGCCGGTAATTTGGAGAGGGAGCGAAACTTGTTTTTAAGCGGATGAAG
AGAGAAGAAAGAAGATGATAAACAATTAATACGGGAGGGGGGGGGGGGGA
GTGAATAGAAAGGGGCTGCTTAAATGGAGGTGTTGGGAGAGAAAAAACAT
CGAAAGTGAGGAGAGGCCGGAG
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