DY305482

Overview
NameDY305482
Unique NameDY305482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1272
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.480e-16
Identity = 66/223 (29.60%), Postives = 105/223 (47.09%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    D ++L+           HV  Y  +L ED  + Y+  F  Y+++G+  ++L E
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPE 181          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.480e-16
Identity = 66/223 (29.60%), Postives = 105/223 (47.09%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    D ++L+           HV  Y  +L ED  + Y+  F  Y+++G+  ++L E
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPE 181          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.480e-16
Identity = 69/223 (30.94%), Postives = 99/223 (44.39%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            RY+VK++RRREGKTDY  R+ L+   K        R VVR TN+ I  Q I     GD V+A A++ EL +YG   G  N  AAY TG L A R        A+  G  E                  A+LD+G   +T G+R++            +PHS +       D  ++  E         H+A++   L  +E    +  F DY++RG +   + E
Sbjct:    6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMR--------AKKAGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHSPE----ILPDEDRIRGE---------HIASFAEKL--EEEGSLERQFSDYLRRGADPKIISE 180          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.933e-16
Identity = 72/222 (32.43%), Postives = 97/222 (43.69%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL 725
            RY+V  +RRREGKT+Y  R +++            RFVVR T K I  QI++A   GDI +A+A++ EL  +YG   GL N  AAY TGLL A R LK               G  Y+V             D+GL   T G +VF            +P  E+      +             I   H+A++ + L E  PE Y+  F  YI RG +   L
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFFSKYISRGFDPTQL 181          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.307e-16
Identity = 69/231 (29.87%), Postives = 101/231 (43.72%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL----EEL*KK 743
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK + AQI+ A   GD  +       L ++G +    N +AAY  GL++             Y+   +   E              A+LD+GL + T G RVF            +PH E             +     + I   HVA Y + L E+ PE Y++ F  Y++RG+  + L    EE+ KK
Sbjct:    6 RYKVPFRRRREGVTNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEEAPEAYKARFSRYLQRGLPPEELPSHFEEVKKK 190          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.307e-16
Identity = 68/224 (30.36%), Postives = 99/224 (44.20%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP-RYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            RY+V ++RRREGKT+Y  R  LI  D         R V R T     AQI+  +  GD+ LASA++ EL  ++G +    N  AAY TG L   R L+                          R   RA++D+GL +   G+RVF            IPH E+      +             I   H+A   R + E++PE+Y+  F  Y++RG++ + L E
Sbjct:    9 RYRVPFRRRREGKTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRALE--------------------------RGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEELPE 186          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.625e-16
Identity = 68/223 (30.49%), Postives = 104/223 (46.64%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A    D ++L+           H+  Y   L EDE E Y+  F  Y+++G+  ++L E
Sbjct:    6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPE 181          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.625e-16
Identity = 68/223 (30.49%), Postives = 104/223 (46.64%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A    D ++L+           H+  Y   L EDE E Y+  F  Y+++G+  ++L E
Sbjct:    8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPE 183          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.346e-16
Identity = 66/223 (29.60%), Postives = 100/223 (44.84%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            RY+V  KRRREGKT+Y  R +LI   K        R VVR  ++    QI  A+  GD+V+ASA+++EL +YG +    N  A Y  G L A++ LK        +G  E                  A++D+GL +    +RVF            IP  +    G   +  ++  E         H+A Y + L E  PE ++  F  Y+  G++ ++L E
Sbjct:    6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD----GVLPEDDRVRGE---------HIANYAKMLKESNPELFKLRFSGYLSAGLDPESLPE 182          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.346e-16
Identity = 69/221 (31.22%), Postives = 103/221 (46.61%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL 725
            RY+V  +RRREGKT+YR R++L+   K        R VVR TN+ + AQI+  +  GD V+    +  L  +G +  L N  AAY TG+L+A++ L+            +  GE              A+LD+GL   T G+RVF            +PHS++       D  ++  E         H+AAY     E  PE+    F +Y KRG++  +L
Sbjct:    8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDE----VLPDDSRIRGE---------HIAAY----YEMNPER----FGEYEKRGLKPSDL 174          
The following BLAST results are available for this feature:
BLAST of DY305482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RL18_METM71.480e-1629.6050S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM61.480e-1629.6050S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_KORCO1.480e-1630.9450S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]
RL18_STAMF1.933e-1632.4350S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_PYRCJ4.307e-1629.8750S ribosomal protein L18P OS=Pyrobaculum calidifo... [more]
RL18_METKA4.307e-1630.3650S ribosomal protein L18P OS=Methanopyrus kandler... [more]
RL18_METVS5.625e-1630.4950S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA5.625e-1630.4950S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_THEPD7.346e-1629.6050S ribosomal protein L18P OS=Thermofilum pendens ... [more]
RL18_ARCFU7.346e-1631.2250S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AF06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305482 ID=DY305482; Name=DY305482; organism=Citrus sinensis; type=EST; length=1272bp
GTACACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAA
GCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAA
GACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGT
ACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATC
ACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATC
TGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTA
ATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTG
AAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGG
AGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCC
TGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGC
GCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAA
GAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTC
ACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTG
ATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGATTACATCAA
GAGAGGTATTGAGGCTGATAACCTGGAAGAGTTGTAAAAGAAGGGTAATG
CTGCCATCCGTGCAGACCCTAACCGAAAAAAATCTGAAAAAAAGCCTCCA
GCAGAAGACAAGAAGGACAACCTGAAAAAACTGGAAGTACGAGAAAGGGA
AGCCGGGTTAATTGGAAGGGTGAAAGGACTCCTTGCTGGTAAAGAACAAA
GAACCGAGAAAATGGAGTGCAAACGAAGAAGTTTTTTGTTCCTAAGGTCA
GTGGGGGATTTCGGGGAAATACGAAAATGTAAGGAACCGGGCGGGTGTGG
AAGGGTGGAGAACGGTTTTTTGTGCTGGGAGTTCCCACGGAGGCGGGAAA
CGTCGGGGGGGGTGCGCAAAACCCTGGAGTGGAACTCTTTTGTCGGCCGG
GGTGCCGGTAATTTGGAGAGGGAGCGAAACTTGTTTTTAAGCGGATGAAG
AGAGAAGAAAGAAGATGATAAACAATTAATACGGGAGGGGGGGGGGGGGA
GTGAATAGAAAGGGGCTGCTTAAATGGAGGTGTTGGGAGAGAAAAAACAT
CGAAAGTGAGGAGAGGCCGGAG
back to top