DY305482

Overview
NameDY305482
Unique NameDY305482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1272
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.637e-15
Identity = 66/225 (29.33%), Postives = 100/225 (44.44%), Query Frame = 3
Query:   51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL 725
            A+  RY+V ++RRREGKT YR R++L+   K        R VVR  N +I AQ++     GD V+ + +++ L +YG +    N  +AY  GL+     LK         G+ E                  A+LD+G  K+T GN ++            IPHSE       +             I   H+A Y + L E+E E Y+  F  Y+K G++ + L
Sbjct:    2 AHGPRYRVPFRRRREGKTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------RGYKE------------------AVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAKMLKENE-ELYKKQFSRYLKEGLDPEQL 179          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.646e-15
Identity = 69/228 (30.26%), Postives = 102/228 (44.74%), Query Frame = 3
Query:   51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            A+  RY+V ++RRREGKT+Y  R+ L+   K        R VVR T     AQI+  +  GD  + SA+  EL R +G +    N  +AY  GLL+     K LE   E                        A+LD+GL   T G+ +F            +PHSE+ + G        +  ++ K     H+A Y + L ED+ E Y+  F  Y+ +G+E + L E
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIG---YKALEKGIE-----------------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG--------EERINGK-----HIAEYAKMLKEDD-ENYKKQFGGYLVKGLEPEKLPE 182          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.762e-15
Identity = 62/225 (27.56%), Postives = 94/225 (41.78%), Query Frame = 3
Query:   51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL 725
            A+   Y+VKY+RRREGKT+Y  R   +    +       R VVR TNK +  Q +     GDI +A+A++ EL ++G +    N  A Y TG L   R  K         G   A+                   D+GL   T G R+F            +P                D  V+   +   H+A Y + L +++P+KY+  F  Y+ RG++  +L
Sbjct:    2 AHGPNYKVKYRRRREGKTNYYRRYTYVLNRSD-------RVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLRAKKA--------GMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKYRGLFSRYLARGLDPKDL 179          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 4.762e-15
Identity = 62/201 (30.85%), Postives = 90/201 (44.78%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEP 665
            RY+V  +RRRE +TDY  R+RL+   K        R V R +NK +TAQ+++    GD  +ASA++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH++   A +S+   +             H+A Y  +L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTRGE-------------HIAEYAESL--DEP 158          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.762e-15
Identity = 62/201 (30.85%), Postives = 90/201 (44.78%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEP 665
            RY+V  +RRRE +TDY  R+RL+   K        R V R +NK +TAQ+++    GD  +ASA++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH++   A +S+   +             H+A Y  +L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTRGE-------------HIAEYAESL--DEP 158          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.122e-15
Identity = 67/226 (29.65%), Postives = 98/226 (43.36%), Query Frame = 3
Query:   51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL 725
            A+   Y+VKY+RRREGKT+Y  R   +  +         R VVR TNK I AQI   +  GD+++ +A++ EL  ++G +  L N  AAY TG LL  R LK         G  E                  A+ D+GL     G+R+F            IP                D  +    I   H+A+Y + L  + PE ++  F  Y++RG+   +L
Sbjct:    2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVG--------------DLGIKEDRIKGVHIASYAQKLEAENPELFKRLFSKYLERGLHPKDL 180          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_PYRAB (50S ribosomal protein L18P OS=Pyrococcus abyssi GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.122e-15
Identity = 69/228 (30.26%), Postives = 101/228 (44.30%), Query Frame = 3
Query:   51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +  K                    +E         A+LD+GL     G+ VF            +PHS + F            E +R  I   H+A Y R L E + EK++  F  Y+++G++ + L E
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKA------------------GIE--------EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPE 183          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.122e-15
Identity = 57/162 (35.19%), Postives = 75/162 (46.30%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 548
            RY V ++RRREG+TDY  R +L+  D         R VVR TN+ I  Q+++A + GD  L SA + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF            IP+ E
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGE 134          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_THEON (50S ribosomal protein L18P OS=Thermococcus onnurineus (strain NA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.385e-14
Identity = 66/228 (28.95%), Postives = 100/228 (43.86%), Query Frame = 3
Query:   51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            A+  RY+V ++RRREGKT+Y  R+ L+   K        R VVR +     AQI+     GD  + SA+  EL R +G +    N  +AY  GLL+  +  K               G D             A+LD+GL   T G+ VF            +PHSE+ +     +  ++  E         H+A Y + L E++  KY+  F  Y+ +G+E + L E
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKSLNHHIAQIVVYDPKGDKTIVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAKK--------------AGID------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIY----PEDYRITGE---------HIANYAKALKEEDEGKYRKQFSSYLVKGLEPEKLPE 183          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.809e-14
Identity = 68/228 (29.82%), Postives = 101/228 (44.30%), Query Frame = 3
Query:   51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +        A+  G  E                  A+LD+GL     G+ VF            +PHS + F     D  ++  E         H+A Y + L E + EK++  F  Y+ +G++ + L E
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF----PDEYRIRGE---------HIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKLPE 183          
The following BLAST results are available for this feature:
BLAST of DY305482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RL18_NANEQ1.637e-1529.3350S ribosomal protein L18P OS=Nanoarchaeum equitan... [more]
RL18_THESM3.646e-1530.2650S ribosomal protein L18P OS=Thermococcus sibiric... [more]
RL18_METS54.762e-1527.5650S ribosomal protein L18P OS=Metallosphaera sedul... [more]
RL18_HALSA4.762e-1530.8550S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_HALS34.762e-1530.8550S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_SULTO8.122e-1529.6550S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_PYRAB8.122e-1530.2650S ribosomal protein L18P OS=Pyrococcus abyssi GN... [more]
RL18_METB68.122e-1535.1950S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_THEON1.385e-1428.9550S ribosomal protein L18P OS=Thermococcus onnurin... [more]
RL18_PYRFU1.809e-1429.8250S ribosomal protein L18P OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305482 ID=DY305482; Name=DY305482; organism=Citrus sinensis; type=EST; length=1272bp
GTACACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAA
GCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAA
GACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGT
ACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATC
ACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATC
TGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTA
ATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTG
AAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGG
AGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCC
TGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGC
GCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAA
GAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTC
ACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTG
ATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGATTACATCAA
GAGAGGTATTGAGGCTGATAACCTGGAAGAGTTGTAAAAGAAGGGTAATG
CTGCCATCCGTGCAGACCCTAACCGAAAAAAATCTGAAAAAAAGCCTCCA
GCAGAAGACAAGAAGGACAACCTGAAAAAACTGGAAGTACGAGAAAGGGA
AGCCGGGTTAATTGGAAGGGTGAAAGGACTCCTTGCTGGTAAAGAACAAA
GAACCGAGAAAATGGAGTGCAAACGAAGAAGTTTTTTGTTCCTAAGGTCA
GTGGGGGATTTCGGGGAAATACGAAAATGTAAGGAACCGGGCGGGTGTGG
AAGGGTGGAGAACGGTTTTTTGTGCTGGGAGTTCCCACGGAGGCGGGAAA
CGTCGGGGGGGGTGCGCAAAACCCTGGAGTGGAACTCTTTTGTCGGCCGG
GGTGCCGGTAATTTGGAGAGGGAGCGAAACTTGTTTTTAAGCGGATGAAG
AGAGAAGAAAGAAGATGATAAACAATTAATACGGGAGGGGGGGGGGGGGA
GTGAATAGAAAGGGGCTGCTTAAATGGAGGTGTTGGGAGAGAAAAAACAT
CGAAAGTGAGGAGAGGCCGGAG
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