DY305482
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.363e-14 Identity = 66/228 (28.95%), Postives = 103/228 (45.18%), Query Frame = 3 Query: 51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731 A+ RY+V ++RRREGKT+Y R++L+ + K R VVR T AQI+ GD L SA+ EL R +G + N +AY GLL+ + A+ G E A+LD+GL T G+ +F +PHSE+ + + +++ E H+A Y + L E++ Y+ F Y+ +G+E + L E Sbjct: 2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSEEIY----PEDYRINGE---------HIANYAKALKEEDEALYRKQFSGYLVKGLEPEKLPE 183
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METTP (50S ribosomal protein L18P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl18p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.363e-14 Identity = 59/183 (32.24%), Postives = 84/183 (45.90%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKY 611 RY+V ++RRREG+T+Y R RLI K R VVR N +IT Q+I A + GD L + + EL YG + N AAY TGLL +++L + G+ E +LD+GL + G+RV+ +PHS + F D ++ EV R Y Sbjct: 6 RYRVPFRRRREGRTNYHVRYRLILSRKP-------RVVVRKGNANITIQLIIAELKGDRTLLTVSSKELRNYGFQHSTGNVPAAYLTGLLFGKKMLAL--------GYNE------------------GILDIGLHSNSRGSRVYAALKGVVDAGVDVPHSPEVF----PDDSRIRGEVIRDY 151
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_PYRHO (50S ribosomal protein L18P OS=Pyrococcus horikoshii GN=rpl18p PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 5.265e-14 Identity = 66/228 (28.95%), Postives = 101/228 (44.30%), Query Frame = 3 Query: 51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731 A+ RY+V ++RRREGKT+YR R++L+ K R VVR + AQII GD L SA+ EL R +G + N +AY GLL+ + K +E A+LD+GL G+ +F +PHS + F E +R I H+A Y R L E + ++++ F Y+++G++ + L E Sbjct: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKA------------------GIE--------EAILDIGLHPPVRGSSIFAVLKGAIDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEDRFRRQFGGYLEKGLDPEKLPE 183
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.265e-14 Identity = 68/236 (28.81%), Postives = 104/236 (44.07%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEEL*KKGNAAIRAD 767 RY+V +RRREGKT+Y R + K RFVVR +NK + Q+I + GD V+A+A++ EL +YG + + A Y TG+L A R K G Y+V D+GL K T G RVF +P + D ++ E H+A+Y +L + PE+YQ F ++RG++ ++ + ++ A I D Sbjct: 6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD-----VVPDESRIRGE---------HIASYAESLKNENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED 194
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 8.980e-14 Identity = 55/170 (32.35%), Postives = 77/170 (45.29%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSK 572 RY+V +RRRE +TDY R+RL+ K R V R +NK + AQ+++ GD LASA++ +L YG E N +AY TGLL R E VE A+LD+GL T G++VF IPH++ A + + Sbjct: 6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR 142
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.532e-13 Identity = 63/221 (28.51%), Postives = 89/221 (40.27%), Query Frame = 3 Query: 66 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL 725 Y+VK +RRREGKT+Y R + + RF+VR TNK + QI GDI++ASA++ EL + +G + N AAY TG L R +K R + D+GL + GNRVF IP D + I H+A Y L + + Y F Y++RG+ +NL Sbjct: 10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGLNPENL 183
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 2.613e-13 Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 3 Query: 27 FAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 167 F K K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTP + Sbjct: 2 FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.613e-13 Identity = 54/162 (33.33%), Postives = 73/162 (45.06%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 548 RY V ++RR EGKTDY R+ L++ TP R VVR TN+ I Q++ + GD L +AY+ EL YG E + AAY TG+L A V+A Y A+LD+GL + G RVF +P+ E Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.613e-13 Identity = 55/145 (37.93%), Postives = 71/145 (48.97%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVF 497 RY V+++RRREG+TDY R RLI +N R VVR TN+ I Q+I+A + GD L + EL +G + L N AAY TG+L A R K A YEG + D+GL +TG RVF Sbjct: 6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQK-----AGYEG---------------------GIADIGLQVASTGARVF 117
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.613e-13 Identity = 63/208 (30.29%), Postives = 87/208 (41.83%), Query Frame = 3 Query: 63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHF 686 RY+V +RRRE +TDY R+RL+ K R V R +N+ + AQ+I+ GD +A + L YG E N +AY TG L R ++ G D A+LD+GL T GN+VF IPH+E A +S++ + H+AAY DEP Y S F Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRNRGE-------------HIAAYAE--QRDEP-LYNSDF 164 The following BLAST results are available for this feature:
BLAST of DY305482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305482 ID=DY305482; Name=DY305482; organism=Citrus sinensis; type=EST; length=1272bpback to top |