DY305482

Overview
NameDY305482
Unique NameDY305482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1272
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.363e-14
Identity = 66/228 (28.95%), Postives = 103/228 (45.18%), Query Frame = 3
Query:   51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            A+  RY+V ++RRREGKT+Y  R++L+        + K R VVR T     AQI+     GD  L SA+  EL R +G +    N  +AY  GLL+  +        A+  G  E                  A+LD+GL   T G+ +F            +PHSE+ +     +  +++ E         H+A Y + L E++   Y+  F  Y+ +G+E + L E
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSEEIY----PEDYRINGE---------HIANYAKALKEEDEALYRKQFSGYLVKGLEPEKLPE 183          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METTP (50S ribosomal protein L18P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.363e-14
Identity = 59/183 (32.24%), Postives = 84/183 (45.90%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKY 611
            RY+V ++RRREG+T+Y  R RLI   K        R VVR  N +IT Q+I A + GD  L +  + EL  YG +    N  AAY TGLL  +++L +        G+ E                   +LD+GL   + G+RV+            +PHS + F     D  ++  EV R Y
Sbjct:    6 RYRVPFRRRREGRTNYHVRYRLILSRKP-------RVVVRKGNANITIQLIIAELKGDRTLLTVSSKELRNYGFQHSTGNVPAAYLTGLLFGKKMLAL--------GYNE------------------GILDIGLHSNSRGSRVYAALKGVVDAGVDVPHSPEVF----PDDSRIRGEVIRDY 151          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_PYRHO (50S ribosomal protein L18P OS=Pyrococcus horikoshii GN=rpl18p PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 5.265e-14
Identity = 66/228 (28.95%), Postives = 101/228 (44.30%), Query Frame = 3
Query:   51 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +  K                    +E         A+LD+GL     G+ +F            +PHS + F            E +R  I   H+A Y R L E + ++++  F  Y+++G++ + L E
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKA------------------GIE--------EAILDIGLHPPVRGSSIFAVLKGAIDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEDRFRRQFGGYLEKGLDPEKLPE 183          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.265e-14
Identity = 68/236 (28.81%), Postives = 104/236 (44.07%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEEL*KKGNAAIRAD 767
            RY+V  +RRREGKT+Y  R  +    K        RFVVR +NK +  Q+I  +  GD V+A+A++ EL  +YG +    +  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF            +P  +        D  ++  E         H+A+Y  +L  + PE+YQ  F   ++RG++ ++  +  ++  A I  D
Sbjct:    6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD-----VVPDESRIRGE---------HIASYAESLKNENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED 194          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 8.980e-14
Identity = 55/170 (32.35%), Postives = 77/170 (45.29%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSK 572
            RY+V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+++    GD  LASA++ +L  YG E    N  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF            IPH++   A + +
Sbjct:    6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR 142          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.532e-13
Identity = 63/221 (28.51%), Postives = 89/221 (40.27%), Query Frame = 3
Query:   66 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL 725
            Y+VK +RRREGKT+Y  R   +   +        RF+VR TNK +  QI      GDI++ASA++ EL + +G +    N  AAY TG L   R +K                          R     + D+GL   + GNRVF            IP                D  +    I   H+A Y   L  +  + Y   F  Y++RG+  +NL
Sbjct:   10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGLNPENL 183          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.613e-13
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 3
Query:   27 FAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 167
            F K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTP +
Sbjct:    2 FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.613e-13
Identity = 54/162 (33.33%), Postives = 73/162 (45.06%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 548
            RY V ++RR EGKTDY  R+ L++       TP  R VVR TN+ I  Q++   + GD  L +AY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF            +P+ E
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.613e-13
Identity = 55/145 (37.93%), Postives = 71/145 (48.97%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVF 497
            RY V+++RRREG+TDY  R RLI   +N       R VVR TN+ I  Q+I+A + GD  L    + EL  +G +  L N  AAY TG+L A R  K     A YEG                      + D+GL   +TG RVF
Sbjct:    6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQK-----AGYEG---------------------GIADIGLQVASTGARVF 117          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.613e-13
Identity = 63/208 (30.29%), Postives = 87/208 (41.83%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHF 686
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N+ + AQ+I+    GD    +A +  L  YG E    N  +AY TG L   R ++               G D             A+LD+GL   T GN+VF            IPH+E   A +S++  +             H+AAY      DEP  Y S F
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRNRGE-------------HIAAYAE--QRDEP-LYNSDF 164          
The following BLAST results are available for this feature:
BLAST of DY305482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RL18_PYRKO2.363e-1428.9550S ribosomal protein L18P OS=Pyrococcus kodakarae... [more]
RL18_METTP2.363e-1432.2450S ribosomal protein L18P OS=Methanosaeta thermop... [more]
RL18_PYRHO5.265e-1428.9550S ribosomal protein L18P OS=Pyrococcus horikoshi... [more]
RL18_IGNH45.265e-1428.8150S ribosomal protein L18P OS=Ignicoccus hospitali... [more]
RL18_HALMA8.980e-1432.3550S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL18_SULSO1.532e-1328.5150S ribosomal protein L18P OS=Sulfolobus solfatari... [more]
RL5_RABIT2.613e-1374.4760S ribosomal protein L5 (Fragments) OS=Oryctolagu... [more]
RL18_METMJ2.613e-1333.3350S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_METLZ2.613e-1337.9350S ribosomal protein L18P OS=Methanocorpusculum l... [more]
RL18_HALWD2.613e-1330.2950S ribosomal protein L18P OS=Haloquadratum walsby... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305482 ID=DY305482; Name=DY305482; organism=Citrus sinensis; type=EST; length=1272bp
GTACACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAA
GCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAA
GACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGT
ACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATC
ACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATC
TGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTA
ATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTG
AAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGG
AGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCC
TGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGC
GCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAA
GAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTC
ACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTG
ATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGATTACATCAA
GAGAGGTATTGAGGCTGATAACCTGGAAGAGTTGTAAAAGAAGGGTAATG
CTGCCATCCGTGCAGACCCTAACCGAAAAAAATCTGAAAAAAAGCCTCCA
GCAGAAGACAAGAAGGACAACCTGAAAAAACTGGAAGTACGAGAAAGGGA
AGCCGGGTTAATTGGAAGGGTGAAAGGACTCCTTGCTGGTAAAGAACAAA
GAACCGAGAAAATGGAGTGCAAACGAAGAAGTTTTTTGTTCCTAAGGTCA
GTGGGGGATTTCGGGGAAATACGAAAATGTAAGGAACCGGGCGGGTGTGG
AAGGGTGGAGAACGGTTTTTTGTGCTGGGAGTTCCCACGGAGGCGGGAAA
CGTCGGGGGGGGTGCGCAAAACCCTGGAGTGGAACTCTTTTGTCGGCCGG
GGTGCCGGTAATTTGGAGAGGGAGCGAAACTTGTTTTTAAGCGGATGAAG
AGAGAAGAAAGAAGATGATAAACAATTAATACGGGAGGGGGGGGGGGGGA
GTGAATAGAAAGGGGCTGCTTAAATGGAGGTGTTGGGAGAGAAAAAACAT
CGAAAGTGAGGAGAGGCCGGAG
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