DY305482

Overview
NameDY305482
Unique NameDY305482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1272
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.412e-13
Identity = 56/163 (34.36%), Postives = 77/163 (47.24%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 551
            RY V ++RRREGKTDY  R +LI  ++        R VVR TN+ I  Q+I A + GD  L +A + EL  YG +   +N  AAY TG+L A                V+A   D+            A+LD+GL + T G +VF            +PH E+
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADHPA----------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEE 135          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.602e-13
Identity = 53/170 (31.18%), Postives = 75/170 (44.12%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSK 572
            RY V  +RRRE +T+Y  R+RL+   K        R V R +N    AQ++     GD  +ASA + +L  +G E    N  AAY TGLL  +R ++               G D             A+LD+GL   T GN+VF            +PH+E  FA + +
Sbjct:    6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQR 142          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.602e-13
Identity = 49/165 (29.70%), Postives = 77/165 (46.67%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 557
            RY+V ++RRREG+TDY  R+RL+   ++       R VVR + + +  Q+++    GD+ L+SA + EL +YG E    N  AAY TGLL   + L                 E Y             +LD+G+  ++ G+RV+            +PH+   F
Sbjct:    6 RYKVAFRRRREGRTDYHQRLRLLLSRED-------RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTL----------------AEGYE----------SGVLDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVF 137          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.212e-12
Identity = 58/222 (26.13%), Postives = 97/222 (43.69%), Query Frame = 3
Query:   66 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNLEE 731
            Y+V++KRRREGKT+Y  R +L++ DK        R VVR T+     Q++     GD  L SA +  L  +G      N +AAY TG L  ++ L         EG+ E                   +LD+G+  +  G +++            IPH++   +   +DS+          I   H+A Y  ++ +DE     + F +YI+ G+  + + +
Sbjct:    7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKALN--------EGYDE------------------TILDIGVQPSIKGTKIYAVLKGALDAGLYIPHND---SILPEDSR----------IRGEHIAQYAESMDDDEK---NAKFANYIRCGLSPEEIPD 179          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.889e-12
Identity = 59/201 (29.35%), Postives = 84/201 (41.79%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEP 665
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N  + AQ+++    GD   A+A + EL  YG +    N  +AY TG L   R      +DA  +                      A+LD+GL   T GN+ F            IPH++   A +S+   +             H+AAY   L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARA-----VDAGLD---------------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSRTRGE-------------HIAAYAEQL--DEP 158          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METAC (50S ribosomal protein L18P OS=Methanosarcina acetivorans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.773e-12
Identity = 60/206 (29.13%), Postives = 98/206 (47.57%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQS 680
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR +++++  Q+I+ +  GDI  +SA ++EL +YG      N  AAY TGLL     LK L+    YEG                      +LD+GL  ++ G+RV+            IP S + F       +++  E         H+A Y R    D PE++++
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSRQD-------RVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEG---------------------GILDIGLQASSAGSRVYAALKGVVDSGFEIPCSPEVF----PPDERIRGE---------HIAGY-REESSDLPEQFEA 164          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.773e-12
Identity = 66/228 (28.95%), Postives = 99/228 (43.42%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIP------HSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCDYIKRGIEADNL 725
            RY+V  +RRREGKT+Y  R R+I            RF+VR T   I  Q+ +A   GD+++A+A+++EL  R+G + G  N +AAY TGLL A   L+ LE   EY                       A+ D+GL +   G  VF            +P       SE+R  G                    H+A+Y + L E+     +  F  Y+  G++ ++L
Sbjct:    6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAA---LRALEKGVEY-----------------------AVPDIGLHRPVKGALVFAAIKAANDAGLKVPMGGEVAPSEERIRG-------------------EHIASYAKILREN--GLLEKRFSRYLANGLQPEDL 179          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METBF (50S ribosomal protein L18P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.098e-11
Identity = 58/206 (28.16%), Postives = 93/206 (45.15%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQS 680
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+I+ +  GDI  +SA + EL +YG      N  AAY TGLL   + LK       YEG                      +LD+GL  ++ G+RV+            +P S + F    +             I   H+A Y R    D PE++++
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLISKQD-------RVVVRKSARNVQIQLIAPTPEGDITYSSAVSSELAKYGYTGVTGNTTAAYLTGLLFGLKSLK-----KGYEG---------------------GILDIGLQASSAGSRVYAALKGIVDSGFEVPCSPEVFPSDER-------------IRGEHIAEY-REESSDLPEQFEA 164          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_METMA (50S ribosomal protein L18P OS=Methanosarcina mazei GN=rpl18p PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.872e-11
Identity = 59/206 (28.64%), Postives = 93/206 (45.15%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQS 680
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+++ +  GDI  +SA + EL +YG      N  AAY TGLL     LK L+    YEG                      +LD+GL  ++ G+RV+            IP S   F    +             I   H+A Y R    D PE++++
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQLLAPTPEGDITYSSAVSSELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEG---------------------GILDIGLQASSAGSRVYAALKGIVDSGFEIPCSSDVFPSDER-------------IRGEHIAEY-REESSDLPEQFEA 164          
BLAST of DY305482 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.445e-11
Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 3
Query:   63 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 557
            RY+V ++RRREGKTDY  R++LI        + K R VVR T+  + AQI+     GD VLA+A + EL + +G +    N +AAY TGLL+  +           E  VE                  A+LD+GL +   G+RV+            +P SE  F
Sbjct:    6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVF 138          
The following BLAST results are available for this feature:
BLAST of DY305482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RL18_METPE3.412e-1334.3650S ribosomal protein L18P OS=Methanosphaerula pal... [more]
RL18_NATPD7.602e-1331.1850S ribosomal protein L18P OS=Natronomonas pharaon... [more]
RL18_METBU7.602e-1329.7050S ribosomal protein L18P OS=Methanococcoides bur... [more]
RL18_METST2.212e-1226.1350S ribosomal protein L18P OS=Methanosphaera stadt... [more]
RL18_HALLT2.889e-1229.3550S ribosomal protein L18P OS=Halorubrum lacusprof... [more]
RL18_METAC3.773e-1229.1350S ribosomal protein L18P OS=Methanosarcina aceti... [more]
RL18_DESK13.773e-1228.9550S ribosomal protein L18P OS=Desulfurococcus kamc... [more]
RL18_METBF1.098e-1128.1650S ribosomal protein L18P OS=Methanosarcina barke... [more]
RL18_METMA1.872e-1128.6450S ribosomal protein L18P OS=Methanosarcina mazei... [more]
RL18_UNCMA2.445e-1133.7350S ribosomal protein L18P OS=Uncultured methanoge... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305482 ID=DY305482; Name=DY305482; organism=Citrus sinensis; type=EST; length=1272bp
GTACACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAA
GCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAA
GACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGT
ACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATC
ACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATC
TGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTA
ATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTG
AAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGG
AGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCC
TGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGC
GCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAA
GAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTC
ACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTG
ATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGATTACATCAA
GAGAGGTATTGAGGCTGATAACCTGGAAGAGTTGTAAAAGAAGGGTAATG
CTGCCATCCGTGCAGACCCTAACCGAAAAAAATCTGAAAAAAAGCCTCCA
GCAGAAGACAAGAAGGACAACCTGAAAAAACTGGAAGTACGAGAAAGGGA
AGCCGGGTTAATTGGAAGGGTGAAAGGACTCCTTGCTGGTAAAGAACAAA
GAACCGAGAAAATGGAGTGCAAACGAAGAAGTTTTTTGTTCCTAAGGTCA
GTGGGGGATTTCGGGGAAATACGAAAATGTAAGGAACCGGGCGGGTGTGG
AAGGGTGGAGAACGGTTTTTTGTGCTGGGAGTTCCCACGGAGGCGGGAAA
CGTCGGGGGGGGTGCGCAAAACCCTGGAGTGGAACTCTTTTGTCGGCCGG
GGTGCCGGTAATTTGGAGAGGGAGCGAAACTTGTTTTTAAGCGGATGAAG
AGAGAAGAAAGAAGATGATAAACAATTAATACGGGAGGGGGGGGGGGGGA
GTGAATAGAAAGGGGCTGCTTAAATGGAGGTGTTGGGAGAGAAAAAACAT
CGAAAGTGAGGAGAGGCCGGAG
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